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Record W4416301706 · doi:10.1002/cpe.70435

Faster Positional‐Population Counts for AVX2, AVX‐512, and ASIMD

2025· article· en· W4416301706 on OpenAlexaff
Robert Clausecker, Daniel Lemire, Florian Schintke

Bibliographic record

VenueConcurrency and Computation Practice and Experience · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Phylogenetic Studies
Canadian institutionsUniversité TÉLUQUniversité du Québec à Montréal
Fundersnot available
KeywordsSIMDSet (abstract data type)PopulationAdaptation (eye)ImplementationInstruction set

Abstract

fetched live from OpenAlex

ABSTRACT The positional population count operation pospopcnt counts for an array of ‐bit words how often each of the bits was set. Various applications in bioinformatics, database engineering, and digital processing exist. Building on earlier work by Klarqvist et al., we show how positional population counts can be rapidly computed using SIMD techniques with good performance from the first byte, approaching memory‐bound speeds for input arrays of as little as 4 KiB. Improvements include an improved algorithm structure, better handling of unaligned and very short arrays, as well as faster bit‐parallel accumulation of intermediate results. We provide a generic algorithm description as well as implementations for various SIMD instruction set extensions, including Intel AVX2, AVX‐512, and ARM ASIMD, and discuss the adaptation of our algorithm to other platforms.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.808
Threshold uncertainty score0.196

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.327
Teacher spread0.314 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designOther design
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes1
Has abstractyes

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