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Record W4416331961 · doi:10.1101/2025.11.17.688987

Hybridization but minimal introgression: ecologically-based divergent selection maintains a steep hybrid zone in parapatric stickleback fish

2025· preprint· W4416331961 on OpenAlexafffund
Olivia Baebler, Quiterie Haenel, Krista B. Oke, Andrew P. Hendry, Daniel Berner

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsMcGill University
FundersFisheries and Oceans CanadaMcGill UniversitySchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungNational Science Foundation
KeywordsParapatric speciationReproductive isolationHybrid zoneEcological speciationSticklebackAllopatric speciationHabitatSelection (genetic algorithm)Genetic algorithm

Abstract

fetched live from OpenAlex

Steep hybrid zones provide key insights into the mechanisms of speciation by reflecting incomplete reproductive isolation between diverging populations. However, the specific reproductive barriers preventing the fusion of such populations generally remain unclear, particularly the role of ecologically-based divergent selection. To address the latter, we investigate a steep zone of transition between lake and inlet stream ecotypes of threespine stickleback fish inhabiting contiguous habitats within a single watershed. Given the spatial proximity of these habitats and the system's postglacial age, historical allopatry is unlikely to have contributed to the evolution of reproductive isolation. Using individual whole-genome sequencing from clinal sampling sites, we identify ongoing hybridization that is limited to a narrow zone-just a few hundred meters long-around the transition between lake and stream habitat. Individuals in this contact zone exhibit strongly bimodal genome-wide ancestry, with a rapid shift toward the stream ecotype's genomic background across the lowest stream section, consistent with strong divergent selection and asymmetric gene flow. Individual-based simulations tailored to this system demonstrate that divergent ecological selection alone can maintain the sharp cline observed and illustrate sustained antagonism between gene flow and selection near the habitat transition. Our findings underscore the power of ecological divergence to generate and maintain reproductive isolation, even in the absence of historical separation, and motivate further empirical work on the ecological underpinnings of steep hybrid zones.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.214
Teacher spread0.205 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes2
Has abstractyes

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