MétaCan
Menu
Back to cohort
Record W4416372071 · doi:10.48550/arxiv.2505.21770

Gradient-flow SDEs have unique transient population dynamics

2025· preprint· en· W4416372071 on OpenAlexfundno aff
Vincent Guan, Joseph Janssen, Nicolas Lanzetti, Antonio Terpin, Geoffrey Schiebinger, Elina Robeva

Bibliographic record

VenueArXiv.org · 2025
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSingle-cell and spatial transcriptomics
Canadian institutionsnot available
FundersNatural Sciences and Engineering Research Council of CanadaCanadian Institute for Advanced ResearchSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungUnited Therapeutics CorporationNational Science Foundation
KeywordsPopulationIdentifiabilityThermal diffusivityDiffusionStochastic differential equationInferenceBrownian motionDiffusion processTransient (computer programming)

Abstract

fetched live from OpenAlex

Identifying the drift and diffusion of an SDE from its population dynamics is a notoriously challenging task. Researchers in machine learning and single-cell biology have only been able to prove a partial identifiability result: for potential-driven SDEs, the gradient-flow drift can be identified from temporal marginals if the Brownian diffusivity is already known. Existing methods therefore assume that the diffusivity is known a priori, despite it being unknown in practice. We dispel the need for this assumption by providing a complete characterization of identifiability: the gradient-flow drift and Brownian diffusivity are jointly identifiable from temporal marginals if and only if the process is observed outside of equilibrium. Given this fundamental result, we propose nn-APPEX, the first Schrodinger Bridge-based inference method that can simultaneously learn the drift and diffusion of a gradient-flow SDE solely from observed marginals. Extensive experiments show that nn-APPEX's ability to adjust its diffusion estimate enables accurate inference, while previous Schrodinger Bridge methods obtain biased drift estimates due to their assumed, and likely incorrect, diffusion.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.015
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.003
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.015
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0010.000
Science and technology studies0.0010.003
Scholarly communication0.0010.003
Open science0.0010.002
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.254
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

Explore more

Same venueArXiv.orgSame topicSingle-cell and spatial transcriptomicsFrench-language works237,207