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Record W4416830923 · doi:10.2196/80182

Performance of ChatGPT-4o, Claude 3 Opus, and DeepSeek-R1 in BI-RADS Category 4 Classification and Malignancy Prediction From Mammography Reports: Retrospective Diagnostic Study

2025· article· en· W4416830923 on OpenAlexvenueno aff
Xingwei Dai, Man Ke, Mengting Mei, Shi Wei, Yi Dai, Ronghua Yan

Bibliographic record

VenueJMIR Medical Informatics · 2025
Typearticle
Languageen
FieldMedicine
TopicRadiomics and Machine Learning in Medical Imaging
Canadian institutionsnot available
Fundersnot available
KeywordsMammographyRetrospective cohort studyMalignancyScreening mammographyMEDLINEBI-RADS

Abstract

fetched live from OpenAlex

Background Mammography is a key imaging modality for breast cancer screening and diagnosis, with the Breast Imaging Reporting and Data System (BI-RADS) providing standardized risk stratification. However, BI-RADS category 4 lesions pose a diagnostic challenge due to their wide malignancy probability range and substantial overlap between benign and malignant findings. Moreover, current interpretations rely heavily on radiologists’ expertise, leading to variability and potential diagnostic errors. Recent advances in large language models (LLMs), such as ChatGPT-4o, Claude 3 Opus, and DeepSeek-R1, offer new possibilities for automated medical report interpretation. Objective This study aims to explore the feasibility of LLMs in evaluating the benign or malignant subcategories of BI-RADS category 4 lesions based on free-text mammography reports. Methods This retrospective, single-center study included 307 patients (mean age 47.25, 11.39 years) with BI-RADS category 4 mammography reports between May 2021 and March 2024. Three LLMs (ChatGPT-4o, Claude 3 Opus, and DeepSeek-R1) classified BI-RADS 4 subcategories from the reports’ text only, whereas radiologists based their classifications on image review. Pathology served as the reference standard, and the reproducibility of LLMs’ predictions was assessed. The diagnostic performance of radiologists and LLMs was compared, and the internal reasoning behind LLMs’ misclassifications was analyzed. Results ChatGPT-4o demonstrated higher reproducibility than DeepSeek-R1 and Claude 3 Opus (Fleiss κ 0.850 vs 0.824 and 0.732, respectively). Although the overall accuracy of LLMs was lower than that of radiologists (senior: 74.5%; junior: 72.0%; DeepSeek-R1: 63.5%; ChatGPT-4o: 62.4%; Claude 3 Opus: 60.8%), their sensitivity was higher (senior: 80.7%; junior: 68.0%; DeepSeek-R1: 84.0%; ChatGPT-4o: 84.7%; Claude 3 Opus: 92.7%), while specificity remained lower (senior: 68.3%; junior: 76.1%; DeepSeek-R1: 43.0%; ChatGPT-4o: 40.1%; Claude 3 Opus: 28.9%). DeepSeek-R1 achieved the best prediction accuracy among LLMs with an area under the receiver operating characteristic curve of 0.64 (95% CI 0.57-0.70), followed by ChatGPT-4o (0.62, 95% CI 0.56-0.69) and Claude 3 Opus (0.61, 95% CI 0.54-0.67). By comparison, junior and senior radiologists achieved higher area under the receiver operating characteristic curves of 0.72 (95% CI 0.66-0.78) and 0.75 (95% CI 0.69-0.80), respectively. DeLong testing confirmed that all three LLMs performed significantly worse than both junior and senior radiologists (all P<.05), and no significant difference was observed between the two radiologist groups (P=.55). At the subcategory level, ChatGPT-4o yielded an overall F1-score of 47.6%, DeepSeek-R1 achieved 45.6%, and Claude 3 Opus achieved 36.2%. Conclusions LLMs are feasible for distinguishing between benign and malignant lesions in BI-RADS category 4, with good stability and high sensitivity, but relatively insufficient specificity. They show potential in screening and may assist radiologists in reducing missed diagnoses.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.041
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.009
Threshold uncertainty score0.047

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0090.041
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.276
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2025
Admission routes1
Has abstractyes

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