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Record W4417116684 · doi:10.64898/2025.11.28.691263

Crop-specific and microbially-mediated impacts of alternative agricultural amendments on plant performance

2025· article· W4417116684 on OpenAlexaff
Isabella Ippolito, Harmanpreet Sidhu, Emily Cacchione, Carlos Colangelo, G. F. Slater, Rebecca T. Batstone

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typearticle
Language
FieldAgricultural and Biological Sciences
TopicPlant-Microbe Interactions and Immunity
Canadian institutionsMcMaster University
Fundersnot available
KeywordsBiosolidsAmendmentAgricultureGreenhouseCropSustainable agricultureContaminationMicrobiome

Abstract

fetched live from OpenAlex

Abstract Rising fertilizer costs and dwindling freshwater supplies are driving interest in alternative agricultural amendments such as biosolids and reclaimed water. While these inputs can promote crop growth, they also contain persistent contaminants like PFAS, which may affect plants directly or indirectly via changes to plant-associated microbiomes. The extent and mechanisms of these effects remain poorly understood, particularly across crops with differing functional traits. We conducted two greenhouse experiments to evaluate the direct and microbially mediated effects of biosolid and reclaimed water amendments spiked with increasing contaminant concentrations on lettuce ( Lactuca sativa ), radish ( Raphanus sativus ), and green pea ( Pisum sativum ). Peas exhibited pronounced negative responses to biosolids, including reduced germination, survival, and biomass, which scaled with contaminant concentration and coincided with visible pathogen infection. Lettuce and radish showed minimal impact, suggesting that plant functional traits—such as symbiotic capacity and nutrient-dependent immune regulation—may mediate susceptibility to contaminant-induced stress. Soil microbiome diversity and composition were altered in a crop- and amendment-specific manner, but microbiomes shaped by prior exposure had limited effects on pea performance when transferred to new plants in the absence of ongoing stressors. These findings suggest that current soil conditions and active plant–microbiome interactions may outweigh legacy microbiome effects. Overall, our study provides a novel framework for evaluating the risks and benefits of wastewater-derived amendments, emphasizing the importance of functional trait variation in predicting plant responses to contaminants and guiding sustainable agricultural practices.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.201
Teacher spread0.189 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2025
Admission routes1
Has abstractyes

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Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicPlant-Microbe Interactions and ImmunityFrench-language works237,207