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Record W4417211748 · doi:10.1093/treephys/tpaf152

Effects of root proanthocyanidins on mycorrhizal colonization and nitrogen uptake in poplar

2025· article· en· W4417211748 on OpenAlexaff
Daisuke Yamakawa, C. Peter Constabel, B. J. Hawkins

Bibliographic record

VenueTree Physiology · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Gene Expression Analysis
Canadian institutionsUniversity of Victoria
Fundersnot available
KeywordsRhizophagus irregularisProanthocyanidinColonizationEctomycorrhizaShootNutrientInoculationAmmoniumFungusMycorrhiza

Abstract

fetched live from OpenAlex

Proanthocyanidins (PAs), or condensed tannins, are widespread plant secondary metabolites common in trees. Proanthocyanidins play roles in plant defense and soil nutrient cycling, and have applications in human medicine and diet. Although PA function in plant shoots is well studied, there is less information on the role of PAs in roots. Proanthocyanidins can act as anti-fungal compounds, suggesting PAs in roots could negatively affect beneficial mycorrhizal fungi, and thus nutrient uptake. Poplars (Populus spp.) are known to produce a wide range of phenolic compounds, and for this work a transformable (P. tremula L. x P. tremuloides Michx.) hybrid was utilized. Transgenic lines with high and low tissue PA concentrations were used to test the hypothesis that high root PA levels would impede mycorrhizal colonization, and consequently, nitrogen uptake. Plants were grown in a sandwich tissue culture system allowing co-culture of the mycorrhizal fungi and roots. Plants from each line were inoculated with either the ectomycorrhizal (EcM) fungus Laccaria bicolor (Maire) P.D. Orton or the arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis (Błaszk., Wubet, Renker & Buscot) C. Walker & A. Schüßler, or were kept as a non-inoculated control. Uptake of ammonium and nitrate by plant roots was measured by 15N-labeling. Successful EcM colonization on poplar roots was confirmed in all the plant lines, while no AM structures were observed. The low-PAs/phenolics line was less colonized by EcM fungi. When inoculated with EcM fungi, plants from all lines tended to have lower root PA concentrations. No significant differences in nitrogen uptake among plant lines were observed, but ammonium uptake was greater than nitrate uptake. Results suggest that PA content is reduced during colonization and that phenylpropanoids may play essential roles in establishing ectomycorrhizal symbioses.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.070
Threshold uncertainty score0.381

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.003
GPT teacher head0.229
Teacher spread0.225 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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