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Record W4417528400 · doi:10.21105/joss.08858

PyMilo: A Python Library for ML I/O

2025· article· W4417528400 on OpenAlexaff
AmirHosein Rostami, Sepand Haghighi, Sadra Sabouri, Alireza Zolanvari

Bibliographic record

VenueThe Journal of Open Source Software · 2025
Typearticle
Language
FieldComputer Science
TopicComputational Physics and Python Applications
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsPython (programming language)ExecutableWorkflowReuseFidelityScripting language

Abstract

fetched live from OpenAlex

PyMilo is an open-source Python package that addresses the limitations of existing machine learning (ML) model storage formats by providing a transparent, reliable, end-to-end, and safe method for exporting and deploying trained models.Current tools rely on black-box or executable formats that obscure internal model structures, making them difficult to audit, verify, or safely share.Meanwhile, tensor-centric formats such as Safetensors (Hugging Face, 2025) securely store and transfer numerical tensors but do not capture the internal and structural composition of classical machine-learning models (e.g., scikit-learn pipelines), which remain PyMilo's primary focus.Others apply structural transformations during export that may degrade predictive performance and reduce the model to a limited inference-only interface.In contrast, PyMilo serializes models in a transparent human-readable format that preserves end-to-end model fidelity and enables reliable, safe, and interpretable exchange.Here, transparent refers to the ability to inspect model internals through a human-readable structure without execution, and end-to-end fidelity denotes that a model exported and re-imported with PyMilo retains the exact same signature, functionality, parameters, and internal structure as the original, ensuring complete behavioral and structural equivalence.This package is designed to make the preservation and reuse of trained ML models safer, more interpretable, and easier to manage across different stages of the ML workflow (Figure 1).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.012
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Software · Consensus signal: Software
Teacher disagreement score0.084
Threshold uncertainty score0.281

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.012
Meta-epidemiology (narrow)0.0030.002
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0020.001
Science and technology studies0.0010.002
Scholarly communication0.0040.006
Open science0.0070.007
Research integrity0.0010.006
Insufficient payload (model declined to judge)0.0840.079

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.309
Teacher spread0.284 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2025
Admission routes1
Has abstractyes

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