MétaCan
Menu
Back to cohort
Record W584380875 · doi:10.1101/sqb.2011.76.fm

Front Matter

2011· paratext· en· W584380875 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueCold Spring Harbor Symposia on Quantitative Biology · 2011
Typeparatext
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicNutrition, Genetics, and Disease
Canadian institutionsnot available
FundersNational Institute of Diabetes and Digestive and Kidney DiseasesKyowa Hakko KirinNational Institute of Child Health and Human DevelopmentNational Institute on AgingUniversity of California, IrvineSchool of Medicine, New York UniversitySchool of MedicineKarolinska InstitutetEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentUniversity of North Carolina at Chapel HillNational Institutes of HealthTerveyden ja hyvinvoinnin laitosJohns Hopkins UniversityUniversità degli Studi di PadovaYork UniversityPepsiCoAmgenUniversité de GenèveYale Liver CenterYale UniversityNational Institute of General Medical SciencesMassachusetts General HospitalConstellation PharmaceuticalsKindai University
KeywordsFront (military)ChemistryGeologyOceanography

Abstract

fetched live from OpenAlex

Cold Spring Harbor Laboratory selected the theme of Metabolism and Disease for the historic 76th Symposium in the series. The decision to focus the 2011 Symposium on this topic reflects the growing convergence of lines of research in fields ranging from cancer biology to aging, demonstrating that key metabolic pathways regulate energy homeostasis in cells, organs, and whole organisms, and that many human diseases share profound dysfunction in metabolism at a molecular level. Previous Symposia that have been devoted in all or in part to metabolism and its dysfunction include Biological Oxidations (1939), The Mammalian Fetus: Physiological Aspects of Development (1954), Cellular Regulatory Mechanisms (1961), The Cardiovascular System (2002), and Clocks and Rhythms (2007). A key theme of early 20th-century investigation, cellular bioenergetics, yielded a vast body of biochemical knowledge about key energy transformation processes such as oxidative phosphorylation and glycosylation. In contrast, the molecular biology revolution of the last half century has focused largely on how cells and organisms process information stored in nucleic acid and how these mechanisms are regulated during fundamental processes, such as cell division and development, or adapt and respond to external conditions. Tremendous light has been shed on processes such as DNA replication, transcription, RNA processing, and protein translation and, more recently, on signaling cascades, developmental lineages, and disease progression (e.g., oncogenesis). Much of this work has been done with little regard for the metabolic state of the cell, which could be safely ignored while the reductionist approach yielded such powerful results. But energy consumption at the cellular and organismal level is once again becoming a major theme of modern research, because imbalances in these processes are increasingly understood to be major contributory factors in many diseases that significantly impact society, including obesity, cardiovascular disease, diabetes, metabolic disorders, and cancer. Moreover, energy homeostasis appears to have a significant impact on the aging process itself. The Symposium aimed to integrate a very broad field of investigative effort, bringing together advances in our understanding of energy intake, consumption, and storage (diet, exercise, and fat), oxygen regulation and hypoxia, circadian rhythms, and life span/aging. The Symposium explored metabolism at molecular (gene expression, posttranslational modifications, protein turnover, cofactors and integrators, hormones, and signals), organellar (mitochondria), cellular, organ system (cardiovascular, bone), and organismal (timing and life span) scales. Diseases impacted by metabolic imbalance or dysregulation that were covered in detail included diabetes, obesity, metabolic syndrome, and cancer. New and emerging technologies were presented for simultaneous monitoring of hundreds of metabolites that allow for sophisticated sampling of the metabolic state of cells. Because the Symposium covered such a broad field, by necessity much excellent work could not be included, and instead, the Proceedings should be viewed as a necessarily eclectic collection of some of the most interesting and stimulating work that came to the organizers’ attention during the 18 months before the meeting.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Insufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.645
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0030.021

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.280
Teacher spread0.259 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it