Archaea : evolution, physiology, and molecular biology
Bibliographic record
Abstract
List of Contributors. Preface. 1. The Birth of the Archaea: A Personal Retrospective: Carl R. Woese (University of Illinois). 2. Natural History of the Archaeal Domain: Patrick Forterre (Institut Pasteur), Simonetta Gribaldo (Institut Pasteur) and Celine Brochier-Armanet (Universite Aix-Marseille I). 3. The Root of the Tree: Lateral Gene Transfer and the Nature of The Domains: David A. Walsh (Dalhousie University), Mary Ellen Boudreau (Dalhousie University), Eric Bapteste (Dalhousie University) and W. Ford Doolittle (Dalhousie University). 4. Diversity of Uncultivated Archaea: Perspectives from Microbial Ecology and Metagenomics: Christa Schleper (University of Bergen). 5. Nanoarchaeota: Harald Huber (University of Regensburg) and Reinhard Rachel (University of Regensburg). 6. Families of DNA Viruses Infecting Hyperthermophilic Crenarchaea: David Prangishvili (Institut Pasteur). 7. Features of the Genomes: Hans-Peter Klenk (e.gene Biotechnologie). 8. Sulfolobus Genomes: Mechanisms of Rearrangements and Change: Kim Brugger (Copenhagen University), Xu Peng (Copenhagen University) and Roger A. Garrett (Copenhagen University). 9. Plasmids: Georg Lipps (University of Bayreuth). 10. Integration Mechanisms: Possible Role in Genome Evolution: Qunxin She (Copenhagen University), Haojun Zhu (Copenhagen University) and Xiaoyu Xiang (Copenhagen University). 11. Genetics: Moshe Mevarech (Tel Aviv University) and Thorsten Allers (University of Nottingham). 12. Genetic Properties of Sulfolobus acidocaldarius and Related Archaea: Dennis W. Grogan (University of Cincinnati). 13. Chromatin and Regulation: John N. Reeve (Ohio State University) and Kathleen Sandman (Ohio State University). 14. DNA Replication and the Cell Cycle: Victoria L. Marsh (Hutchison MRC Research Centre) and Stephen D. Bell (Hutchison MRC Research Centre). 15. DNA Repair: Malcolm F. White (University of St Andrews). 16. Transcriptional Mechanisms: Michael Thomm (University of Regensburg) and Winfried Hausner (University of Regensburg). 17. Transcriptional Regulation in Haloarchaea: Felicitas Pfeifer (Darmstadt University of Technology), Torsten Hechler (Darmstadt University of Technology), Sandra Scheuch (Darmstadt University of Technology) and Simone Sartorius-Neef (Darmstadt University of Technology). 18. Aminoacyl-tRNAs: Deciphering and Defining the Genetic Message: Alexandre Ambrogelly (Yale University), Juan Carlos Salazar (Yale University), Kelly Sheppard (Yale University), Carla Polycarpo (Yale University), Hiroyuki Oshikane (Tokyo Institute of Technology), Yuko Nakamura (Tokyo Institute of Technology), Shuya Fukai (Tokyo Institute of Technology), Osamu Nureki (Tokyo Institute of Technology) and Dieter Soll (Yale University). 19. Translational Mechanisms and Protein Synthesis: Paola Londei (Universita degli studi di Bari). 20. Expanding World of Small Non-coding RNAs: Arina Omer (University of British Columbia), Maria Zago (University of British Columbia) and Patrick P. Dennis (National Science Foundation). 21. Transcriptomics, Proteomics and Structural Genomics of Pyrococcus furiosus: Michael W. W. Adams (University of Georgia), Francis E. Jenney Jr (University of Georgia), Chung-Jung Chou (North Carolina State University), Scott Hamilton-Brehm (University of Georgia), Farris L. Poole II (University of Georgia), Keith R. Shockley (North Carolina State University), Sabrina Tachdjian (North Carolina State University) and Robert M. Kelly (North Carolina State University). 22. The Glycolytic Pathways of Archaea: Evolution by Tinkering: John van der Oost (Wageningen University) and Bettina Siebers (University Duisberg-Essen). 23. Metabolism of Inorganic Sulfur Compounds: Arnulf Kletzin (Darmstadt University of Technology). 24. Methyl-Coenzyme M Reductase in Methanogens and Methanotrophs: Rudolf K. Thauer (Max-Planck-Institute for Terrestrial Microbiology) and Seigo Shima (Max-Planck-Institute for Terrestrial Microbiology). 25. Methylation of Metal(loid)s by Methanoarchaea: Production of Volatile Derivatives with High Ecotoxicological Impact and Health Concern: Klaus Michalke (University Duisberg-Essen), Jorg Meyer (University Duisberg-Essen) and Reinhard Hensel (University Duisberg-Essen). 26. Biotechnology: Ksenia Egorova (Hamburg University of Technology) and Garabed Antranikian (Hamburg University of Technology). Wolfram Zillig. References. Index
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.001 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".