Bibliographic record
Abstract
A dataset containing 59792 species occurrences available in GBIF matching the query: { "and" : [ "VerbatimScientificName is one of (Aspergillus sydowii, Nannochloropsis oculata, Sargassum fluitans, Batrachochytrium dendrobatidis, Heterobasidion annosum, Mycena citricolor, Mycosphaerella fijiensis, Peronospora tabacina, Phytophthora cinnamomi, Puccinia psidii, West Nile, Bryophyllum pinnatum, Melampsoridium hiratsukanum, Podosphaera macularis, Discula destructiva, Phakopsora meibomiae, Tilletia indica, Phialophora cinerescens, Mycosphaerella rabiei, Stigmina deflectens, Ophiostoma tenellum, Crustodontia chrysocreas, Melampsora larici-populina, Sphaeropsis sapinea, Ceratocystis fimbriata, Gymnosporangium sabinae, Elsinoe australis, Ustilago esculenta, Mycosphaerella laricina, Puccinia hemerocallidis, Cyclaneusma minus, Venturia saliciperda, Rhytisma acerinum, Ceratocystis fagacearum, Fusarium circinatum, Gnomoniopsis smithogilvyi, Ophiostoma piliferum, Cronartium pini, Amanita phalloides, Dichotomophthora Mehrlich, Pestalotiopsis disseminata, Neonectria coccinea, Huntiella moniliformis, Verticillium alboatrum, Tilletia walkeri, Stromatinia cepivora, Fusarium graminearum, Bipolaris maydis, Graphium euwallaceae, Phyllosticta citricarpa, Ophiognomonia clavigignenti-juglandacearum, Dothistroma septosporum, Ophiostoma novo-ulmi, Lachnellula willkommii, Graphium kuroshium, Raffaelea lauricola, Puccinia modiolae, Leptographium procerum, Phakopsora pachyrhizi, Septoria glycines, Eballistra oryzae, Puccinia graminis, Helicobasidium longisporum, Fusarium oxysporum, Tilletia caries, Nalanthamala diospyri, Lecanosticta acicola, Phyllachora maydis, Epicoccum sorghinum, Apiognomonia veneta, Neonectria faginata, Cryphonectria parasitica, Paracremonium pembeum, Puccinia striiformis, Puccinia chondrillina, Cryptodiaporthe populea, Calonectria pseudonaviculata, Leptographium wingfieldii, Gremmeniella abietina, Urocystis tritici, Claviceps africana, Allantophomopsiella pseudotsugae, Pseudogymnoascus destructans, Amylostereum areolatum, Puccinia pelargonii-zonalis, Gymnosporangium asiaticum, Golovinomyces verbasci, Colletotrichum queenslandicum, Puccinia suaveolens, Sporisorium cruentum, Puccinia calcitrapae, Uromyces transversalis, Austropuccinia psidii, Neocosmospora euwallaceae, Chrysomyxa rhododendri, Ophiostoma ulmi, Rigidoporus vinctus, Cronartium ribicola, Fusarium kuroshium, Erythricium salmonicolor, Oxyporus subulatus, Psammonobiotus communis, Skeletonema potamos, Trochammina hadai, Colpomenia peregrina, Coscinodiscus wailesii, Stephanodiscus binderanus, Peronospora belbahrii, Thalassiosira punctigera, Phytophthora ramorum, Sargassum horneri, Stephanodiscus subtilis, Elachista Duby, Phytophthora pseudocryptogea, Undaria pinnatifida, Phytophthora lateralis, Cyclotella atomus, Chorda Stackhouse, Dictyota ciliolata, Cutleria cylindrica, Hymenomonas roseola, Psammonobiotus Golemansky, Odontella sinensis, Skeletonema subsalsum, Prymnesium parvum, Sphacelaria H.C.Lyngbye, Phytophthora tentaculata, Spongospora subterranea, Cyclotella pseudostelligera, Acineta nitocrae, Ancistrum cyclidioides, Thalassiosira baltica, Phytophthora quercina, Sargassum muticum, Cotton leafroll, Influenza A, Plantago asiatica, Monkeypox virus, Tomato yellow, Tulip virus, Carp sprivivirus, Sweet potato, Hop stunt, Rabbit hemorrhagic, Soybean dwarf, Colombian datura, Severe acute, Potato mop-top, Cowpea mild, Cucumber green, Fowlpox virus, Bean common, Avocado sunblotch, Cotton leaf, Xanthomonas citri, Aeromonas salmonicida, Renibacterium salmoninarum, Xanthomonas oryzae, Xanthomonas campestris, Cylindrospermopsis raciborskii, Liberibacter asiaticus, Aparavirus Taura, Chlamydophila psittaci, Lyngbya majuscula, Mastrevirus Switchgrass, Okavirus Gill-associated, Vibrio cholerae, Vibrio parahaemolyticus, Alexandrium catenella, Alexandrium cohorticula, Alexandrium concavum, Alexandrium hiranoi, Alexandrium kutnerae, Alexandrium leei, Alexandrium minutum, Alexandrium monilatum, Alexandrium ostenfeldii, Alexandrium tamarense, Alexandrium tamiyavanichii, Amphidinium carterae, Amphidinium operculatum, Amylax triacantha, Blepharocysta paulsenii, Boreadinium pisiforme, Centrodinium complanatum, Chaetoceros didymus, Chattonella marina, Chattonella subsalsa, Cladostephus spongiosus, Cochlodinium catenatum, Cochlodinium polykrikoides, Coolia monotis, Dictyocha speculum, Dictyopteris prolifera, Dinophysis acuminata, Dinophysis acuta, Dinophysis caudata, Dinophysis fortii, Dinophysis lativelata, Dinophysis miles, Dinophysis norvegica, Dinophysis sacculus, Dinophysis similis, Dinophysis tripos, Dolichodinium lineatum, Ensiculifera angulata, Fibrocapsa japonica, Gaarderia compressa, Gymnodinium catenatum, Haplosporidium nelsoni, Heterocapsa circularisquama, Heterocapsa rotundata, Heterodinium inaequale, Heterodinium milneri, Heterosigma akashiwo, Histioneis crateriformis, Karenia brevisulcata, Karenia mikimotoi, Karlodinium australe, Lingulodinium polyedra, Macrocystis pyrifera, Mesodinium rubrum, Mutimo cylindricus, Naiadinium polonicum, Oblea rotunda, Ostreopsis lenticularis, Ostreopsis siamensis, Oxytoxum biconicum, Palaeophalacroma unicinctum, Peridiniella danica, Perkinsus marinus, Pfiesteria piscicida, Phalacroma mitra, Phalacroma rotundatum, Prorocentrum belizeanum, Prorocentrum concavum, Prorocentrum cordatum, Prorocentrum emarginatum, Prorocentrum hoffmannianum, Prorocentrum lima, Prorocentrum rhathymum, Prorocentrum triestinum, Protoceratium globosum, Protoceratium reticulatum, Protoperidinium bispinum, Protoperidinium parcum, Protoperidinium parvicollum, Protoperidinium parvispinum, Protoperidinium subsphaericum, Protoperidinium thulesense, Protoperidinium vulgare, Pseudochattonella verruculosa, Pseudo-nitzschia australis, Pseudo-nitzschia delicatissima, Pseudo-nitzschia fraudulenta, Pseudo-nitzschia multiseries, Pseudo-nitzschia multistriata, Pseudo-nitzschia pseudodelicatissima, Pseudo-nitzschia pungens, Pseudo-nitzschia seriata, Pseudo-nitzschia subfraudulenta, Pyrodinium bahamense, Scrippsiella spinifera, Scytosiphon gracilis, Spatulodinium pseudonoctiluca, Takayama pulchella, Thalassiosira angustelineata, Thalassiosira pacifica, Tripos dens, Tripos furca, Tripos muelleri, Bretziella fagacearum, Didymosphenia geminata, Emaravirus Rose, Geosmithia morbida, Nectria coccinea, Neonectria ditissima, Ranavirus Large, Rhabdovirus Spring)", "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)", "Country is one of (United States of America, Canada, Mexico, Aruba, Anguilla, Bahamas, Barbados, Belize, Bermuda, Virgin Islands (British), Cayman Islands, Costa Rica, Cuba, Dominica, Dominican Republic, El Salvador, Guatemala, Greenland, Grenada, Haiti, Honduras, Jamaica, Montserrat, Nicaragua, Panama, Saint Barthélemy, Saint Martin (French part), Saint Vincent and the Grenadines, Turks and Caicos Islands, Trinidad and Tobago, Sint Maarten (Dutch part), Puerto Rico)", "HasCoordinate is true", "OccurrenceStatus is Present", "Year is greater than or equal to 1990", "CoordinateUncertaintyInMeters is less than 1000", "ScientificName is not null", "DecimalLongitude is not null", "DecimalLatitude is not null" ] } The dataset includes 59792 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010033-240216155721649/datasets/export for details. Data from some individual datasets included in this download may be licensed under less restrictive terms.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.006 |
| Meta-epidemiology (narrow) | 0.003 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.002 |
| Bibliometrics | 0.007 | 0.010 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.004 | 0.003 |
| Open science | 0.002 | 0.003 |
| Research integrity | 0.002 | 0.002 |
| Insufficient payload (model declined to judge) | 0.336 | 0.422 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".