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Record W6893962548 · doi:10.5281/zenodo.6160649

Rhyacodrilus saelonae Rodriguez & Fend, 2013, sp. n.

2013· article· en· W6893962548 on OpenAlexaboutno aff

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2013
Typearticle
Languageen
FieldEnvironmental Science
TopicParasite Biology and Host Interactions
Canadian institutionsnot available
Fundersnot available
KeywordsChaetaH&E stainAppendageStizostedionApex (geometry)

Abstract

fetched live from OpenAlex

Rhyacodrilus saelonae sp. n. (Figs 1–3) Holotype. USNM 1202047, whole-mounted worm stained in hematoxylin and mounted in Canada balsam. Paratypes. USNM 1202048-52: 3 mature specimens from the type locality, stained in hematoxylin or borax carmine and whole-mounted (17 March 2008); 1 mature, dissected worm, stained with hematoxylin (7 May 2006); 1 sagittally sectioned (17 March 2008). MNCN 16.03/3079: 3 mature specimens from the type locality, stained in borax carmine and whole-mounted (17 March 2008). Type locality. Nacimiento River, above Fort Hunter Liggett, at upstream bridge, Nacimiento-Fergusson Road, Monterey Co., California, USA. N36.0132°, W121.4201° (17 March 2008). Other material. From the type locality: 1 whole mount (22 April 2006), 8 whole mounts and 1 dissected (7 May 2006), 2 sagittally sectioned and 13 whole mounts (17 March 2008). Nacimiento River below Negro Fork, N35.9969° W121.3797°, 6 whole mounts (3 April 2008). Etymology. The species is dedicated to Saelon Renkes, who has contributed to the discovery of many Nearctic oligochaete species. Description. (Measurements are based on individuals with sperm in spermathecae, with or without welldeveloped eggs). Number of segments 65–96 (based on 5 complete specimens). Diameter of the body in segment VIII (whole-mounted specimens) 217–362 µm. Elongated, round prostomium (197–240 µm long) (Figs 1 A, 2A). Secondary annulation clearly marked in II; faint but visible in other preclitellar segments of most specimens. Epidermis not densely glandular (8–12 µm high), small glandular cells unordered. Clitellum from the level of chaetae in the spermathecal segment to the end of the post-atrial segment, thickest dorsally and laterally, weak near male and spermathecal pores; clitellar epidermis up to 47 µm high (in most specimens about 20–30 μm), formed by large glandular cells in the dorsal and lateral part, extending ventrally in the post-atrial segment; ventral epidermis thickened but not glandular in the spermathecal segment, and thin in the area between the male pores (Figs 1 A, B, 2C). Dorsal bundles composed of smooth hair-like and pectinate chaetae. Hair chaetae (1)2–3 per bundle anteriorly, and (0)1–2(3) in postclitellar segments, much longer than body diameter (408–800 µm) in the anterior segments, and longer or about the same as body diameter in posterior segments. Usually 3–4 pectinate chaetae in anterior bundles (rarely 2), and (1) 2–3 in postclitellar segments; 67–111 µm long (much shorter in II, down to 41µm). Pectinates in anterior segments with lyre-shaped lateral teeth (7–13 µm long) and 2–4 shorter (4–8 µm) intermediate teeth; pectinates in posterior segments with shorter lateral teeth (6–8 µm long) (Fig. 2 D, E). The last segments of complete specimens with only 1 pectinate chaeta (48 µm long) per bundle, with very short teeth, and without hair chaetae. Ventral chaetae bifid; 5–9 per bundle (rarely 3 in segment II) in anterior segments, 4–7 in postclitellar segments; distal tooth 1.6–1.8 times longer than proximal in anterior segments, becoming shorter (about same length) and thinner posteriorly (Fig. 2 F, G). In the last segments down to 1–3 ventral chaetae per bundle, with distal tooth shorter and thinner than proximal. One pair spermathecal pores; simple, oval openings, up to midway between ventral chaetal line and lateral line, near anterior septum of the testicular segment. Modified spermathecal chaetae behind spermathecal pores, (3)4–5 per bundle (commonly, one of them developing), in line with ventral chaetae, sometimes on a low mound with cellular extensions from the ventral gland penetrating the epidermis behind chaetae. Spermathecal chaetae 116–158 µm long and 4 µm shaft diameter, with very long, sharply-pointed, grooved distal tooth (14–19 µm long); the short, proximal tooth appears as a wide prominence at the base (Figs 2 H, I, L). Nodulus 0.3–0.4 from the distal end. Two ridges of raised epidermis, U-shaped to nearly circular, open laterally (diameter 80–100 μm, 20–35 μm high at midline) and conjoined at ventral midline between the spermathecal pores, forming an "anchorage bridge" (sensu Cuadrado and Martínez-Ansemil, 2001). A conspicuous, transverse epidermal fold (about 80–120 μm wide, up to 30–50 μm deep) opens at septum behind (and in line with) spermathecal chaetae. One pair simple male pores in the ovarian segment, on (or slightly median to) the ventral chaetal line, at about the posterior 1/4 of the segment. Modified penial chaetae slightly median to the male pore, in the atrial segment, single-pointed, 120–161 µm long, 3–4 per bundle, weak nodulus at 0.2 from distal end (Fig. 2 M). Penial chaetae all of the same size or the middle ones slightly longer; arranged roughly fanwise, with tips close together and directed medially; usually on low tubercles (about 25 µm high); the tubercles and chaetae surrounded by a ring of muscles (Fig. 1 F). A complex of dorso-ventral muscular strands is also associated with the penial chaetae, attaching to the tubercle near the tips of the chaetae; bases of chaetae have the usual chaetal musculature attaching them to the ventral body wall. One pair female pores at posterior intersegment of ovarian segment, midway between ventrolateral chaetal line and lateral line. Reproductive organs are often shifted forward by 1 or 2 segments relative to typical Rhyacodrilus, but they retain their relative positions: spermathecal pores in VIII, IX, or X correspond to male pores in IX, X, or XI, respectively, and the clitellum begins in the spermathecal segment. Nucleated coelomocytes with granulated cytoplasm (diameter 12–18 µm) (Fig. 2 B). Pharyngeal glands welldeveloped in IV–V, usually extending into VI. Nephridia paired, single, or absent in the postclitellar segments, sometimes in one or more preclitellar segments; with short, narrow anteseptal funnel, an elongate (sometimes inflated), granular postseptale (Fig. 2 J), and long efferent duct which may extend posteriorly into the next segment; the duct terminates at an inconspicuous nephropore just in front of the ventral chaetae. One pair ventral glands behind the ventral bundles of chaetae, from segment (IV)V to the spermathecal segment, and from the post-atrial segment as far back as XX; the largest in the spermathecal segment (up to 140 μm wide), well-developed in prespermathecal and post-atrial segments (50–90 μm wide), then progressively smaller. These glands project freely into the coelomic cavity and the cell necks extend through the muscular layers and body wall to the body surface forming an area glareosa (sensu Schmelz 2003: 49f) visible in vivo (Figs 1 E, 2K, 3A–C ag). Sperm sac may extend anteriorly to segments VIII and IX, and backwards to segment XIII. Egg sac may extend back to segment XIV. One pair testes in the spermathecal segment (typically IX) and one pair ovaries in the atrial segment (typically X). Spermathecae composed of a short, conical duct, usually shorter than wide (34–60 µm long, 48–62 µm maximum diameter), with a thick wall of columnar epithelium, and an oval ampulla which occupies most of the length of the segment (120–282 µm maximum diameter in mated worms), with thin epithelium (6–12 µm high). Sperm free within lumen of spermathecal ampulla, but anterior ends of spermatozoids may be oriented towards one end of the ampulla. One ampulla may penetrate into an adjacent segment. Several specimens show in lateral view a dorsal fold in the ampulla (Fig. 3 D). Male duct opens into a conical sperm funnel; vas deferens highly convoluted, ciliated, and of nearly uniform width (diameter 24–37 µm), length 530–750 μm, running along the ventral side of the segment and narrowing as it joins the atrium subapically, or in some specimens near the middle of the ampulla. Atrial ampulla ovate (95–175 µm long, 54–96 μm wide), completely covered by a thick (30–60 μm) layer of prostate cells, at least some of which are in densely packed clusters of 10 or more cells. Ampullar epithelium appears irregular and vacuolated, to 25 μm thick, sometimes nearly filling the atrial lumen (Fig. 3 F–H). Atrial duct 100–194 µm long, 43–52 µm wide), slightly narrowed entally, with a uniform, columnar epithelium, narrow lumen, and thin outer muscle layer; a dense array of muscular strands runs from ventral body wall to the outer muscle layer along the entire length of the duct (Fig. 1 C, D). Female funnels long, in some specimens more than half the diameter of the body (Fig. 3 F, G). Anomalies. Positions of reproductive organs vary considerably in this species. More than half of the specimens had the genitalia shifted one or two segments forward from the usual positions in the Rhyacodrilinae. Of 36 mature worms examined, 12 had the spermathecae in X, 16 in IX, and 8 in VIII; in all cases the relative position of other reproductive organs to the spermathecae was preserved, and both male ducts and spermathecae were functional (with sperm). Some species of the genus Rhyacodrilus have been reported to have architomy followed by regeneration, which may be associated with a shift in the position of the reproductive segments (e.g. Snimschikova 1985), although we have not seen any evidence of developing anterior segments in this species. Two specimens had enlarged ventral chaetae in the post-atrial segment with upper teeth much longer than lower, similar to the spermathecal chaetae (but smaller); in this same segment there was also a small gonad and a slightly enlarged ventral gland behind the chaetal bundle. One specimen had an extra spermatheca on one side of the body, at the atrial segment (X), but only the spermatheca in the preatrial segment was filled with sperm. Another specimen had a single spermatheca (with sperm) in VII, a rudimentary spermatheca in VI, one pair spermathecae with a single functional male duct in VIII, and functional male ducts paired in IX. Distribution and habitat. Known only from type locality, a largely undisturbed section of the Naci

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.022
Threshold uncertainty score0.043

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0000.001
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0110.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.270
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Published2013
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