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Record W6901888670 · doi:10.6084/m9.figshare.14767108

Additional file 1 of Human endometrium-derived stem cell improves cardiac function after myocardial ischemic injury by enhancing angiogenesis and myocardial metabolism

2021· article· en· W6901888670 on OpenAlexaff

Bibliographic record

VenueOpen MIND · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAngiogenesis and VEGF in Cancer
Canadian institutionsUniversity Health Network
Fundersnot available
KeywordsAngiogenesisHepatocyte growth factorVenn diagramTyrosine kinaseDownregulation and upregulationGene expressionFunction (biology)Gene expression profiling

Abstract

fetched live from OpenAlex

Additional file 1: Fig. S1. Results from RNA-seq and Protein array. a Heatmap from RNA-seq representing expression levels for differentially expressed genes (DEGs) between hBMSCs and hEMSCs. Red: upregulation; Blue: downregulation. Expression intensity was based on R software analysis of gene expression levels. b Twenty categories with significant enrichment were screened for functional enrichment analysis of gene ontology (GO). Yellow line: Number of genes. Bars: Significance level. c Heatmap showing up- and down-regulation for DEGs in hBMSCs and hEMSCs related to angiogenesis. d Venn diagram and protein array analysis between hBMSCs and hEMSCs for DEGs. Black circle in Venn diagram represents DEGs related to angiogenesis between hEMSCs and hBMSCs by RNA-seq, while gray circle represents DEGs identified through protein arrays. The intersection of the two circles represents overlapping DEGs between RNA-seq and protein array for angiogenesis, where five angiogenesis-related factors were found, of which PGF and ANG4 were up-regulated in hBMSCs, while FLT-1, TEK (also known as TIE2), and FGF9 were upregulated in hEMSCs. FGF9: Fibroblast growth factor 9; FLT-1: Fms-like tyrosine kinase 1; PGF: Placental growth factor; ANG4: Angiopoietin 4. Table S1. Formulation of Differentiation Media. Table S2. Real-time qPCR primer sets.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.013
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.850
Threshold uncertainty score0.214

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.013
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0020.003
Science and technology studies0.0010.000
Scholarly communication0.0020.002
Open science0.0020.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.8500.155

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.232
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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Same venueOpen MINDSame topicAngiogenesis and VEGF in CancerFrench-language works237,207