Additional file 1: Figure S1. of A novel strain of cynomolgus macaque cytomegalovirus: implications for host-virus co-evolution
Bibliographic record
Abstract
Map of ORFs in CyCMV Mauritius genome. CyCMV Mauritius encodes 290 putative ORFs that are annotated by gene name and colour coded based on gene families. Of the CyCMV Mauritius ORFs, 268 (92 %) share homologues with CyCMV Ottawa, 239 share homologues with RhCMV 68–1 (82 %), and 158 (54 %) share homologs with HCMV strains. CyCMV Mauritius like RhCMV but unlike CyCMV Ottawa or HCMV contains ORFs with homology to COX-2. CyCMV ORFs with an HCMV homologue are annotated by “Cy” followed by the HCMV name. Arrowheads indicate the directions of the ORFs. Core genes are herpes virus core genes. (PDF 4584 kb)
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.014 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.003 | 0.004 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.001 | 0.002 |
| Open science | 0.002 | 0.001 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.899 | 0.262 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".