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Record W6912658550 · doi:10.5281/zenodo.5753526

Yamaguticestus squali Caira & Bueno & Jensen 2021

2021· article· en· W6912658550 on OpenAlexaboutno aff

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2021
Typearticle
Languageen
FieldEnvironmental Science
TopicParasite Biology and Host Interactions
Canadian institutionsnot available
Fundersnot available
KeywordsHolotypeGenusPeduncle (anatomy)SuckerSternumAnimal ecologyType specimen

Abstract

fetched live from OpenAlex

YAMAGUTICESTUS SQUALI (YAMAGUTI, 1952) COMB. NOV. BASIONYM: PHYLLOBOTHRIUM SQUALI YAMAGUTI, 1952 (FIG. 5A–E) The following details of the surface features on the scolex of this species, based on examination of a specimen with SEM collected from the type host near the type locality, expand the original description of this species by Yamaguti (1952) and the redescription based on the holotype by Vasileva et al. (2002). Anterior-most regions of bothridia densely covered with capilliform filitriches (Fig. 5B). Distal surfaces of loculus densely covered with gongylate columnar spinitriches and capilliform spinitriches (Fig. 5C); distal surfaces of apical sucker not observed. Proximal bothridial surfaces densely covered with capilliform filitriches (Fig. 5D). Cephalic peduncle lacking. Neck (Fig. 5E) and strobila with capilliform filitriches arranged in wide scutes. Synonyms: Phyllobothrium squali Yamaguti, 1952; Crossobothrium squali (Yamaguti, 1952) Williams, 1968. Type host: Pacific spiny dogfish, Squalus suckleyi (Girard, 1855), (Squaliformes: Squalidae de Blainville). Additional hosts: None. Type locality: Pacific Ocean, off Onahama, Hukusiima Prefecture, Japan. Additional localities: Sea of Japan, off Oga City, Akita Prefecture, Japan (39°46′55.8″N, 139°51′49.2″E) (JN- 67); eastern Pacific Ocean, off Bamfield, Vancouver Island, Canada (48°50′7.9152″N, 125°08′7.7208″W). Site of infection: Spiral intestine. Material examined: One specimen examined with SEM collected from a shark collected off the west coast of Japan. Sequence data: GenBank accession MW 419975, hologenophore (BAM 5-wP9) LRP no. 8674. Remarks: By erecting the genus Yamaguticestus, we have established a more appropriate home for the species formerly referred to as Phyllobothrium squali. The transfer of this species from Phyllobothrium, as Yamaguticestus squali, resolves the issue of the nonmonophyly of Phyllobothrium that has been raised by a number of previous authors (e.g. Ruhnke, 2011; Caira et al., 2014). However, issues surrounding the identity of Y. squali remain. It was originally described by Yamaguti (1952) from a host identified as the Pacific spiny dogfish (Squalus suckleyi as Squalus suckleyii) off the eastern coast of Japan. Vasileva et al. (2002) subsequently provided a thorough redescription of this species based on examination of the holotype, in which they included illustrations of the scolex and details of the terminal genitalia for the first time. However, this species has also been reported from sharks identified as the piked dogfish (Squalus acanthias) from a variety of other localities globally, including the north-eastern Atlantic Ocean in the Bay of Biscay off Concarneau, France (Euzet, 1959) and the Irish Sea (McCullough & Fairweather, 1983; McCullough et al., 1986), the western Atlantic Ocean off Rhode Island, USA (Pickering & Caira, 2012; Ruhnke & Workman, 2013; Caira et al., 2014) and the Black Sea (Vasileva et al., 2002). Given the relatively strict degree of host specificity seen in most groups of elasmobranch-hosted cestodes (Caira & Jensen, 2014), reports from two different host species would normally have warranted closer scrutiny. However, the situation was confounded by the fact that Squalus suckleyi has been considered a junior synonym of Squalus acanthias for decades (see Compagno, 1984), and this synonymy has been embraced by many of those working with P. squali previously. For example, Vasileva et al. (2002) listed Squalus acanthias as the type host of P. squali, and Pickering & Caira (2012) referred to the cestodes of Squalus acanthias off Rhode Island as P. squali because Squalus acanthias was the accepted identity of the type host of this cestode species at that time. The relatively recent application of molecular methods to help inform elasmobranch identifications has led to a more careful assessment of the identities and distributions of species of Squalus Linnaeus, 1758 globally (Ebert et al., 2010). One of the results of that work was the resurrection of the name Squalus suckleyi for the species that occurs in the northern Pacific Ocean and is both molecularly and morphologically distinct from Squalus acanthias, which is now considered to be restricted to the Atlantic Ocean and the southern portions of the Pacific Ocean. Thisrevisedhosttaxonomyhasprofoundimplications for the taxonomy of P. squali. The type host of P. squali is Squalus suckleyi, but the shark specimens reported to host this cestode species off Rhode Island, France and Ireland and in the Mediterranean and Black Seas are Squalus acanthias. This causes us to revisit the question of the conspecificity of the cestodes reported from Squalus suckleyi and Squalus acanthias. Although Vasileva et al. (2002) found their worms from the Black Sea (and thus from Squalus acanthias) generally to be consistent with the morphology of the holotype of P. squali (from Squalus suckleyi), they reported the worms from the Black Sea to be substantially larger than the holotype from Squalus suckleyi off Japan (i.e. 214–603 vs. 141 mm). Also interesting is the fact that the bothridia of the worm identified as P. squali taken from Squalus acanthias in the Irish Sea and examined with SEM by McCullough & Fairweather (1983: fig. 9) are more folded than those of the specimen of P. squali from Squalus suckleyi off Japan examined here (Fig. 5A). These differences led us to begin to question the conspecificity of material from these two host species and thus to advocate that the concept of P. squali be limited to information taken from specimens parasitizing Squalus suckleyi in the northern Pacific Ocean. More detailed comparisons between that material and specimens collected from Squalus acanthias in localities throughout the Atlantic Ocean and its adjacent water bodies are required to assess whether specimens from the two host species and their associated localities are conspecific. Until that time, specimens from Squalus acanthias, including those of Ruhnke & Workman (2013) and Caira et al. (2014) for which sequence data were generated, should be referred to as Yamaguticestus cf. squali. As noted by Vasileva et al. (2002), the material from the velvet belly shark Etmopterus spinax (Linnaeus, 1758), which Euzet (1959) identified as Crossobothrium squali, differs from Y. squali in a number of respects. We believe this material is likely to represent an undescribed species of Yamaguticestus, the formal description of which requires examination of additional material.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.022
Threshold uncertainty score0.061

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0000.001
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0180.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.052
GPT teacher head0.322
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2021
Admission routes1
Has abstractyes

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