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Record W6912700142 · doi:10.5281/zenodo.6154438

Heterodera fengi Wang, Zhuo, Ye, Zhang, Peng & Liao, 2013, n. sp.

2013· article· en· W6912700142 on OpenAlexaboutno aff

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2013
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicNematode management and characterization studies
Canadian institutionsnot available
Fundersnot available
KeywordsParatypeHolotypeStyletNematodeBulbExcretory systemCloaca

Abstract

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Heterodera fengi n. sp. Figs. 1–4 Measurements. See Table 1. Material examined. Type-material: Holotype vulval cone, three paratype vulval cones, one paratype male and ten paratype J2s are deposited in the USDA Nematode Collection, Beltsville, Maryland; two paratype vulval cones, one paratype male and ten paratype J2s in the Canadian National Nematode Collection, Ottawa, Canada. Other voucher specimens are available at the Plant Nematode Research Laboratory, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China. Stage Character Holotype Paratype Cyst n 25 L (including neck) 524.7 481.5±90.5 (370.4–587.5) L (excluding neck) 417.2 371.5±63.7 (280.0–465.0) W 307.3 288.0±31.4 (225.8–335.0) Neck 107.5 95.9±20.2 (66.1–122.5) L (including neck)/Diam. ratio 1.7 1.7±0.2 (1.4–1.9) Vulval plate n 10 Fenestrate length 42.5 48.4±9.0 (40.0–65.0) Semifenestrate length 17.5 21.9±4.6 (16.3–30.0) Fenestrate width 53.75 50.9±5.0 (45.0–62.5) Vulval slit length 47.5 47.0±5.3 (40.0–60.0) Vulval-anal distance 33.75 33.7±4.4 (27.5–42.5) Underbridge 95 91.7.0±6.9 (85.0–105.0) Female n 10 L (including neck) 467.1±38.2 (429.0–547.5) L (excluding neck) 378.6±39.2 (340.0–450.0) W 270.8 ±41.9 (204.8–343.0) Neck 98.3±11.0 (85.0–116.4) L (including neck)/Diam. ratio 1.8 ±0.2 (1.3–2.1) Stylet (n=3) 23.4±0.5 (23.0–24.0) DGO (n=2) 6.1±0.2 (1.3, 2.1) Anterior end to median bulb (n=3) 59.8±10.9 (48.8–70.5) Length of median bulb (n=3) 25.9±1.7 (24.2–27.6) Width of median bulb (n=3) 23.4±2.1 (21.4–25.6) J2 n 20 L 481.5±23.3 (440.0–520.0) a 23.4±1.3 (20.7–26.3) b 4.6±0.5 (3.9–5.2) b' 3.3±0.2 (2.8–3.5) c 6.9±0.4 (6.2–7.6) c' 5.0±0.2 (4.7–5.4) Stylet length 23.2±0.6 (22.0–24.0) Lip height 4.8±0.3 (4.5–5.0) Lip diam. 9.6±0.5 (9.0–10.0) DGO 4.9±0.3 (4.5–5.3) Anterior end to excretory pore 103.3±5.6 (95.0–113.8) Anterior end to median bulb 69.4±3.1 (60.0–73.0) ......continued on the next page Description. Cyst. Lemon-shaped with distinct vulval cone, variable in size. Cuticle light brown to dark brown. Neck prominent, stylet and other pharyngeal structures indistinct. Remnant subcrystalline layer present. Cuticle with irregular zig-zag pattern. Ambifenestrate. Underbridge present, thicker in central part and bifurcate at ends. Bullae absent. Eggs packed in the body. Anus small, but distinct. White female. Body lemon-shaped, white, covered with subcrystalline layer. Head set off, with two annuli. Stylet strong, with rounded and backwardly sloping knobs. Median bulb massive. Excretory pore indistinct. Egg sac large, 1.5–2 times size of female. Male. Body vermiform, straight or slightly curved ventrally after relaxation. Labial region hemispherical with a distinct labial disc and four postlabial annuli. Lateral field with four incisures, outer bands areolated. Well developed stylet with rounded basal knobs, sloping posteriorly. Median bulb with strong valve plates. Nerve ring broad, located slightly posterior to median bulb. Hemizonid ca 2 annuli long, situated 7–10 annuli anterior to excretory pore. Tail very short and bluntly rounded with protruding cloacal tubus. Phasmids indistinct. Spicules arcuate, each terminating with a bifurcate tip. Gubernaculum straight and simple. J2. Body vermiform, straight or slightly ventrally curved after relaxation. Lip region offset, hemispherical, with a labial disc and three or four postlabial annuli. Body annuli 1.8–2.0 μm at mid-body. Lateral field with three incisures. Stylet robust with knobs slightly projecting or flat anteriorly. Median bulb ovoid and prominent. Hemizonid situated slightly anterior to excretory pore. Anus distinct. Tail elongate conical with rounded terminus, distinct hyaline terminal section 41.2 (35.0–45.0) μm long, occupying 58.9 (50.0–62.5)% of tail length. Genital primordium oval, 10.0 (9.5–10.2) μm long, 7.5 (7.2–8.2) μm wide, 200 (195.0–211.3) μm anterior to tail terminus. Phasmids pore-like, 4–7 annuli posterior to anus. Diagnosis and relationships. Heterodera fengi n. sp. belongs to the Cyperi group. Cysts are characterized by prominent vulval cone with ambifenestrate, bifurcate underbridge that is thicker in middle and a 47.0 (40.0–60.0) μm long vulval slit, but without bullae; Second-stage juveniles are characterized by a 23.2 (22.0–24.0) μm long stylet with slightly projecting or anteriorly flattened knobs, three incisures in lateral field, a 70.2 (62.5–77.0) μm long tail with bluntly rounded terminus and hyaline portion forming 58.9 (50.0–62.5)% of the tail length; Males are characterized by a 25.1 (24.5–26.3) μm long stylet with rounded knobs sloping posteriorly, four incisures in lateral field, a 29.8 (27.5–31.3) μm long spicule with bifurcate tip. The new species appears morphologically most similar to three species of the Cyperi group, i.e., H. graminophila Golden & Birchfield, 1972, H. oryzae Luc & Brizuela, 1961 and H. graminis Stynes, 1971. Heterodera fengi n. sp. differs from H. graminophila by more incisures in the male lateral field (4 vs 3), the J2 stylet knob shape (slightly projecting or flat anteriorly vs rounded), the slightly longer J2 tail (62.5–77.0 μm vs 52.0–67.0 μm) and the longer J2 hyaline tail portion (35.0–45.0 μm vs 23.0–38.0 μm); from H. oryzae by the absence of bullae (vs presence), the underbridge ends shape (bifurcate vs dendroid-like), the slightly shorter vulvalanal distance (27.5–42.5 μm vs 33.5–64.0 μm), the slightly longer J2 tail length (62.5–77.0 μm vs 46.2–68.9 μm) and the J2 tail terminus shape (rounded vs pointed); from H. graminis by the longer vulval slit length (40.0–60.0 μm vs 27.0–46.0 μm), the presence of subcrystalline in cyst stage (vs absence), the presence of a large egg sac containing eggs (vs a small egg sac but no eggs), the J2 stylet knob shape (slightly projected or flat anteriorly vs concave), the longer J2 body (440.0–520.0 μm vs 343.0–444.0 μm), the longer J2 tail (62.5–77.0 μm vs 44.0–65.0 μm), the longer J2 hyaline region of tail (35.0–45.0 μm vs 23.0–36.0 μm) and shorter spicule (27.5–31.3 μm vs 31.0–35.0 μm). The new species is also closely related to other members of the Cyperi group, including H. oryzicola Rao & Jayaprakash, 1978, H. elachista Ohshima, 1974, H. pakistansis Maqbool & Shahina, 1986 and H. raski Basnet & Jayaprakash, 1984. It can be distinguished from H. oryzicola by the absence of bullae (vs presence), the J2 stylet knob shape (slightly projecting or flat anteriorly vs rounded), the longer J2 hyaline region of tail (35.0–45.0 μm vs 22.0–29.0 μm) and the longer spicule (27.5–31.3 μm vs 19.0–25.0 μm); from H. elachista by the absence of bullae (vs presence), the longer J2 body length (440.0–520.0 μm vs 330.0–450.0 μm), the longer J2 stylet (22.0–24.0 μm vs 16.0–21.0 μm) and the longer male stylet (24.5–26.3 μm vs 20.0–21.0 μm); from H. pakistansis by the larger fenestrae length and width (40.0–65.0 × 45.0–62.5 μm vs 25.0–38.0 × 15.0–20.0 μm), the longer J2 stylet (22.0– 24.0 μm vs 16.8–18.0 μm), the smaller J2 DGO (4.5–5.3 μm vs 5.6–6.8 μm), the male stylet basal knob shape (rounded sloping posteriorly vs anteriorly directed) and more postlabial annuli of male (4 vs 3); from H. raski by the shorter cyst (370.4–587.5 μm vs 710.0–835.0 μm), the lower L/W ration of cyst (1.4–1.9 vs 2.7–3.5), the presence of large egg sac in female (vs absent), the longer J2 stylet (22.0–24.0 μm vs 17.5–20.0 μm), the J2 stylet knob shape (slightly projected or flat anteriorly vs rounded), the tail terminus shape of J2 (bluntly rounded vs acutely pointed), the shorter spicule (27.5–31.3 μm vs 33.5–36.0 μm) and longer male stylet (24.5–26.3 μm vs 20.5–22.0 μm). Compared with the other three species reported from bamboo, namely H. bamboosi (Kaushal & Swarup, 1988) Wouts & Baldwin, 1998, H. koreana (Vovlas, Lamberti & Choo, 1992) Mundo-Ocampo, Troccoli, Subbotin, Cid, Baldwin & Inserra, 2008, and H. hainanensis Zhuo, Wang, Ye, Peng & Liao, 2013, the new species can be easily distinguished from them by the presence of fenestrae (vs afenestrate). In addition, Heterodera fengi n. sp. further differs from H. bamboosi by the presence of a prominent vulval cone (vs absence of vulval cone) and more incisures in the male lateral field (4 vs 3); from H. koreana and H. hainanensis by the longer J2 stylet (22.0–24.0 μm vs 16.0–20.0 μm in H. koreana and 15.8–17.5 μm in H. hainanensis) and more lip annuli of J2 (3–4 vs 2). Type-locality and habitat: Heterodera fengi n. sp. was collected from roots and rhizosphere of bamboo (Phyllostachys pubescens Mazel), which were collected from Guangzhou City (latitude N23°8’, longitude E113°17’), Guangdong Province, China from 2009 to 2012. The soil type is sandy loam and the local climate is subtropical. Etymology: The species name is given to show respect to Professor Feng Zhixin for his outstanding contributions to our knowledge of plant nematodes. Molecular profiles and phylogenetic status. The sequenced LSU D2D3 and ITS region are 787 bp and 1039 bp respectively. A Blastn search of H. fengi n. sp. on the LSU D2D3 revealed high-scoring matches with some Heterodera species, the most similar being with Heterodera sp. GX665 (GenBank accession number JX 081322), which is an unidentified species isolated from the rhizosphere of an unknown weed in Guangxi Province in China. The identities of these two sequences are 96.9% (756/787) with five insertions/deletions (0.6%). Compared with H. elachista (HM560842), a member of the Cyperi group, H. fengi n. sp. has 28 variable sites with 96.8% identity (756/784) and five insertions/deletions (0.6%). A Blastn search of H. fengi n. sp. on the ITS region also revealed similarities with some Heterodera species, but the identities were less than 80%. The highest match was H. elachista (JN202917) with only 79.2% identity (920/1161) and 109 insertions/deletions (9.4%). Compared with Heterodera sp. GX665 (GenBank accession number JX 081325), H. fengi n. sp. has 126 variable sites with 74.5% identity (863/1158) and 169 insertions/de

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesScience and technology studies, Scholarly communication, Insufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.254
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0020.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0570.022

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.035
GPT teacher head0.209
Teacher spread0.175 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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