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Record W6912728974 · doi:10.5281/zenodo.7884290

bcgsc/goldrush: 1.0.2

2022· other· en· W6912728974 on OpenAlexaff

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2022
Typeother
Languageen
Field
Topic
Canadian institutionsCanada's Michael Smith Genome Sciences Centre
Fundersnot available
KeywordsError detection and correctionDocumentationMode (computer interface)Error analysisProcess (computing)

Abstract

fetched live from OpenAlex

Detect if no reads pass the Phred and minimum size thresholds for GoldRush-Path and print more informative error message Improve error handling for reads parameter in goldrush makefile Detect any error with reads parameter specified and print more informative error message for users Update GoldRush-Edit submodule Use new sensitive mapping mode when using ntLink for mappings Update test demo Documentation updates

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.017
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Software · Consensus signal: Software
Teacher disagreement score0.195
Threshold uncertainty score0.654

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.017
Meta-epidemiology (narrow)0.0040.004
Meta-epidemiology (broad)0.0030.002
Bibliometrics0.0040.002
Science and technology studies0.0020.001
Scholarly communication0.0040.004
Open science0.0050.004
Research integrity0.0030.004
Insufficient payload (model declined to judge)0.1950.287

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.246
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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