pyOpenSci/python-package-guide: pyOpenSci packaging guide v0.4
Bibliographic record
Abstract
What's Changed Fix: reorganize index structure for users by @lwasser in https://github.com/pyOpenSci/python-package-guide/pull/188 Fix: minor edits by @lwasser in https://github.com/pyOpenSci/python-package-guide/pull/206 Fix broken stuff 2 (and keep stuff unbroken) by @sneakers-the-rat in https://github.com/pyOpenSci/python-package-guide/pull/205 Use pyproject.toml, remove requirements.txt by @sneakers-the-rat in https://github.com/pyOpenSci/python-package-guide/pull/204 docs: add ctb as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/208 all my requirements gone by @sneakers-the-rat in https://github.com/pyOpenSci/python-package-guide/pull/207 docs: add calekochenour as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/214 Version specification in main text of tutorials/pyproject-toml.md by @sneakers-the-rat in https://github.com/pyOpenSci/python-package-guide/pull/191 Fix: update link to coc by @lwasser in https://github.com/pyOpenSci/python-package-guide/pull/216 docs: add miguelalizo as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/219 Fix: Issue 201 - conda-forge tutorial learning objectives by @miguelalizo in https://github.com/pyOpenSci/python-package-guide/pull/218 docs: add nyeshlur as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/231 docs: add Tyler-Bonnell as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/233 docs: add ptressel as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/235 update: hatch tutorial by @ucodery in https://github.com/pyOpenSci/python-package-guide/pull/217 Update installable-code.md by @nyeshlur in https://github.com/pyOpenSci/python-package-guide/pull/230 Update installable-code.md by @nyeshlur in https://github.com/pyOpenSci/python-package-guide/pull/220 Update publish-conda-forge.md to fix tiny typo by @ptressel in https://github.com/pyOpenSci/python-package-guide/pull/225 Update publish-pypi.md to remove near-duplicate line. by @ptressel in https://github.com/pyOpenSci/python-package-guide/pull/223 Update intro.md: Remove Duplicate Link/Sentence by @Tyler-Bonnell in https://github.com/pyOpenSci/python-package-guide/pull/221 Update text to reflect modern Hatch by @ofek in https://github.com/pyOpenSci/python-package-guide/pull/241 Add: text on Hatch backend compatibility by @ucodery in https://github.com/pyOpenSci/python-package-guide/pull/228 More consistent LICENSE and CODE_OF_CONDUCT usage by @ptressel in https://github.com/pyOpenSci/python-package-guide/pull/234 Add: changelog-file.md to the Docs-for-Contributors-and-Maintainers section. by @miguelalizo in https://github.com/pyOpenSci/python-package-guide/pull/222 Update publish-pypi.md with consistent usage for "test PyPI". by @ptressel in https://github.com/pyOpenSci/python-package-guide/pull/224 Add: Tutorial for migrating from setup.py to pyproject.toml using Hatch by @miguelalizo in https://github.com/pyOpenSci/python-package-guide/pull/229 Update get-to-know-hatch.md for consistent style of "Hatch" etc. by @ptressel in https://github.com/pyOpenSci/python-package-guide/pull/227 API Documentation Tutorial: Fix a few typos and clean up punctuation by @Tyler-Bonnell in https://github.com/pyOpenSci/python-package-guide/pull/242 Include missed update step pyproject.toml by @Tyler-Bonnell in https://github.com/pyOpenSci/python-package-guide/pull/243 Fix: sphinx warnings by @lwasser in https://github.com/pyOpenSci/python-package-guide/pull/246 [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pyOpenSci/python-package-guide/pull/245 docs: add ucodery as a contributor for code, review, and 2 more by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/251 literalinclude directives by @ucodery in https://github.com/pyOpenSci/python-package-guide/pull/239 update version from 0.1.0 to 0.1 by @pb-413 in https://github.com/pyOpenSci/python-package-guide/pull/262 docs: add kenseehart as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/283 docs: add ryanskeith as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/284 Update version references in tutorial: 0.1.0 -> 0.1 by @pb-413 in https://github.com/pyOpenSci/python-package-guide/pull/279 docs: add pb-413 as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/285 docs: add sosey as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/286 docs: add BSuperbad as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/288 Add command line example for finding hatch config file location by @sosey in https://github.com/pyOpenSci/python-package-guide/pull/256 Fixing Table of Contents/ Nav by @BSuperbad in https://github.com/pyOpenSci/python-package-guide/pull/266 docs: add chenghlee as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/289 docs: add Vaunty as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/290 Replace usage of "Anaconda Cloud" in various contexts by @chenghlee in https://github.com/pyOpenSci/python-package-guide/pull/269 Update github actions versions to current by @sosey in https://github.com/pyOpenSci/python-package-guide/pull/277 Unique package name - Corrective action steps by @pb-413 in https://github.com/pyOpenSci/python-package-guide/pull/280 use literalinclude in code-style-linting-format by @ucodery in https://github.com/pyOpenSci/python-package-guide/pull/259 Add: hatch plus meson-python python package example to guidebook by @ucodery in https://github.com/pyOpenSci/python-package-guide/pull/274 docs: add flpm as a contributor for review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/291 docs: add zackw as a contributor for review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/292 docs: add sn3hay as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/295 Setup Vale (prose linter) with a minimal unobtrusive configuration by @flpm in https://github.com/pyOpenSci/python-package-guide/pull/281 [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pyOpenSci/python-package-guide/pull/294 Change formatting to satisfy codespell check by @willingc in https://github.com/pyOpenSci/python-package-guide/pull/296 Add: help wanted automated workflow to guidebook repo by @lwasser in https://github.com/pyOpenSci/python-package-guide/pull/297 Always use python -m with pip by @jhkennedy in https://github.com/pyOpenSci/python-package-guide/pull/300 Update diagram -hatch backends by @lwasser in https://github.com/pyOpenSci/python-package-guide/pull/302 docs: add stefanor as a contributor for review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/303 docs: add stefmolin as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/306 Mention that the code of conduct has placeholder values by @stefmolin in https://github.com/pyOpenSci/python-package-guide/pull/305 docs: add WeepingClown13 as a contributor for review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/307 Add support for internationalization to the guide by @flpm in https://github.com/pyOpenSci/python-package-guide/pull/298 Add a translation guide for contributors by @flpm in https://github.com/pyOpenSci/python-package-guide/pull/304 Start spanish translation by @flpm in https://github.com/pyOpenSci/python-package-guide/pull/309 [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pyOpenSci/python-package-guide/pull/312 [Tuesday july 2 merge] Fix: update hatch install instructions by @lwasser in https://github.com/pyOpenSci/python-package-guide/pull/308 Structure the CONTRIBUTING guide to define sprint tasks by @flpm in https://github.com/pyOpenSci/python-package-guide/pull/311 Prepare translation files for SciPy sprint by @flpm in https://github.com/pyOpenSci/python-package-guide/pull/314 docs: add choldgraf as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/315 docs: add npch as a contributor for review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/316 update badges url by @sneakers-the-rat in https://github.com/pyOpenSci/python-package-guide/pull/318 docs: add RobPasMue as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/344 docs: add yardasol as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/345 docs: add ayhanxian as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/346 docs: add hpodzorski-USGS as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/347 docs: add ncclementi as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/348 docs: add John-Drake as a contributor for code, and review by @allcontributors in https://github.com/pyOpenSci/python-package-guide/pull/349 Update conf.py to includ
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.005 | 0.032 |
| Meta-epidemiology (narrow) | 0.004 | 0.005 |
| Meta-epidemiology (broad) | 0.003 | 0.003 |
| Bibliometrics | 0.003 | 0.003 |
| Science and technology studies | 0.002 | 0.002 |
| Scholarly communication | 0.009 | 0.012 |
| Open science | 0.007 | 0.009 |
| Research integrity | 0.003 | 0.007 |
| Insufficient payload (model declined to judge) | 0.563 | 0.739 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".