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Record W6930169125 · doi:10.5281/zenodo.10250085

Neofusicoccum parvum Crous, Slippers & A. J. L. Phillips, Studies

2023· article· en· W6930169125 on OpenAlexaboutno aff

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2023
Typearticle
Languageen
FieldMedicine
TopicDiverse Approaches in Healthcare and Education Studies
Canadian institutionsnot available
Fundersnot available
KeywordsConidiumApex (geometry)HyalineAsexual reproductionDothideomycetesPycnidiumTardigradeLocule

Abstract

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Neofusicoccum parvum (Pennycook & Samuels) Crous, Slippers & A.J.L. Phillips, Studies in Mycology 55: 248 (2006), MycoBank MB500879 (Figure 15) Type: NEW ZEALAND, Bay of Plenty, Te Puke, No 3 Road, Baldwin Orchard, on small dead branch of Populus nigra (Salicaceae), 17 Dec 1981, S. R. Pennycook (holotype PDD 45438, culture ex-type ATCC 58191). Sexual morph and asexual morph reported. See Phillips et al. (2013) for illustrations and descriptions. Isolate CDP 1380. Sexual morph: Undetermined. Asexual morph: Conidiomata on palm leaflets in culture pycnidial, globose, non-stromatic, uniloculate, black, solitary, rarely aggregated in small groups of 2–3, immersed to semi-immersed, often covered by whitish mycelial hairs. Conidiophores mostly reduced to conidiogenous cells, when present, formed from the cells lining the locule wall, hyaline, smooth- and thin-walled, simple, cylindrical to subcylindrical, aseptate. Conidiogenous cells hyaline, smooth- and thin-walled, simple, discrete, integrated, determinate, cylindrical, often slightly tapering towards the apex, straight or curved, aseptate, holoblastic, often enteroblastic, proliferating at the same level giving rise to inconspicuous periclinal thickenings, 7.63–12.99(–14.07) × 1.86–3.71 μm, 95 % confidence limits = 10.37–11.27 × 2.66–2.92 μm (mean ± SD = 10.82 ± 1.45 × 2.79 ± 0.43 μm, n = 30). Conidia ellipsoidal to fusoid, ends subacute, occasionally apex obtuse, often base truncate or subtruncate, smooth- and thin-walled, hyaline and aseptate, 15.79–20.47 × 4.5–6.32 μm, 95 % confidence limits = 17.37–18.23 × 5.45–5.69 μm (mean ± SD = 17.80 ± 1.20 × 5.57 ± 0.34 μm), mean ± SD conidium length/width ratio = 3.21 ± 0.34 (n = 30). Culture characteristics: Colonies on 1/2 PDA, reaching 85 mm diam. after 7 d at 20 ℃ in darkness. Surface flat, raised towards the margin, with fluffy, dense aerial mycelium, with filamentous, entire margin, circular shape, whitish to pale towards the centre, opaque. Reverse orangish. No diffusible pigment. Material examined: PORTUGAL, Lisbon, Parque das Nações, Jardim das Palmeiras, on foliar lesions of leaflets of Phoenix dactylifera (Arecaceae), 16 October 2018, Diana S. Pereira (specimen HDP 045, new host record), living culture CDP 0382 (ITS sequence OQ996223, tef1 sequence OR233681, tub2 sequence OR 233688); Parque das Nações, on foliar lesions of leaflets of Phoenix roebelenii (Arecaceae), 8 May 2021, Diana S. Pereira (specimen HDP 088, new host record), living culture CDP 1380 (ITS sequence OQ996229, tef1 sequence OR233680, tub2 sequence OR 233689). Hosts: Reported from more than 100 genera in 61 families, including Acanthaceae (Avicennia marina), Actinidiaceae (Actinidia chinensis, A. deliciosa), Anacardiaceae (Magnifera indica, Pistacia vera, Sclerocarya birrea subsp. caffra), Apiaceae (Ferula communis, Torilis arvensis), Araliaceae (Pseudopanax laetus), Araucariaceae (Araucaria heterophylla, Wollemia nobilis), Arecaceae (Phoenix dactylifera, P. roebelenii), Asteraceae (Artemisia sp.), Cannabaceae (Cannabis sativa), Celastraceae (Gymnosporia buxifolia), Celastraceae (Maytenus hookeri), Combretaceae (Lumnitzera racemosa, Terminalia catappa, T. sericea), Cupressaceae (Chamaecyparis lawsoniana, C. obtusa, C. pisifera, Cryptomeria japonica, Cupressus funebris, C. sempervirens, Juniperus communis, Sequoia sempervirens, Sequoiadendron giganteum, Thuja occidentalis, T. plicata, Thujopsis dolabrata), Ebenaceae (Diospyros kaki), Ericaceae (Rhododendron decorum, R. niveum, Vaccinium sp., V. corymbosum × darrowi, V. corymbosum), Euphorbiaceae (Hevea brasiliensis), Euphorbiaceae (Vernicia fordii), Fabaceae (Schizolobium parahyba var. amazonicum, Senna siamea, Vachellia karroo), Fagaceae (Quercus agrifolia, Q. ilex, Q. robur, Q. rubra, Q. suber), Ginkgoaceae (Ginkgo biloba), Grossulariaceae (Ribes sp.), Hippocastanaceae (Aesculus hippocastanum), Icacinaceae (Nothapodytes nimmoniana), Juglandaceae (Carya illinoinensis, Julgans sp., J. regia, J. sinensis), Lamiaceae (Platostoma palustre), Lauraceae (Cinnamomum camphora, C.verum, Persea americana, Phoebe sheareri, P.zhennan), Lecythidaceae (Barringtonia racemosa), Liliaceae (Lilium lancifolium), Linaceae (Linus usitattisimum), Linnaeaceae (Kolkwitzia amabilis), Lythraceae (Punica granatum), Magnoliaceae (Magnolia sp.), Malvaceae (Theobroma cacao), Melastomataceae (Tibouchina sp., T. lepidota, T. urvilleana), Meliaceae (Melia azedarach), Moraceae (Ficus carica, F. microcarpa), Musaceae (Musa sp.), Myristicaceae (Myristica fragrans), Myrtaceae (Blepharocalyx salicifolius, Corymbia citriodora, C. torelliana, Eucalyptus sp., E. urograndis, E. camaldulensis, E. cinerea, E. citriodora, E. cloeziana, E. dorrigoensis, E. dunnii, E. globulus, E. grandis, E. microcorys, E. nicholii, E. nitens, E. obliqua, E. ovata, E. pellita, E. robusta, E. saligna, E. scoparia, E. smithii, E. tereticornis, E. urophylla, Heteropyxis natalensis, Metrosideros polymorpha, Myrcianthes cisplatensis, Myrciaria tenella, Myrrhinium atropurpureum var. octandrum, Psidium guajava, P. pubifolium, Syzygium cordatum, S. guineense, S. paniculatum, Xanthostemon sp.), Nyssaceae (Camptotheca acuminata), Oleaceae (Ligustrum lucidum, Olea africana, O. europaea), Pandanaceae (Pandanus sp.), Pinaceae (Cedrus atlantica), Pinaceae (Picea abies, Pinus canariensis, P. halepensis, P. nigra, P. patula, P. pinaster, P. pinea), Pittosporaceae (Pittosporum tobira), Platanaceae (Platanus acerifolia, P. hybrida), Podocarpaceae (Afrocarpus falcatus, Podocarpus henkelii), Proteaceae (Buckinghamia sp., Grevillea sp., G. robusta, Leucadendron sp., L. salignum × laureolum, Leucospermum sp., Macadamia integrifolia, Protea sp., P. compacta × magnifica, P. cynaroides, P. laurifolia, P. lepidocarpodendron, P. repens, Telopea sp.), Rhizophoraceae (Bruguiera gymnorhiza, B. sexangula, Rhizophora mangle, R. mucronata), Rosaceae (Amygdalus persica, Eriobotrya japonica, Fragaria × ananassa, Malus sp., M. domestica, M. pumila, M. sylvestris, Prunus americana, P. armeniaca, P. avium, P. cerasoides, P. dulcis, P. laurocerasus, P. persica, P. persica var. nucipersica, P. salicina, Pyrus bretschneideri, P. communis, P. pyrifolia, Rhaphiolepis indica, Rosa sp., Rubus fruticosus, R. idaeus), Rubiaceae (Coffea arabica), Rutaceae (Citrus sp., C. limon, C. reticulata, C. sinensis), Salicaceae (Populus sp., P. nigra, P. nigra var. italica, Salix sp.), Santalaceae (Santalum album), Sapindaceae (Acer pseudoplatanus, Dimocarpus longan, Koelreuteria paniculata, Nephelium lappaceum), Solanaceae (Solanum melongena), Taxaceae (Taxus chinensis var. mairei), Theaceae (Camellia sinensis), Thymelaeaceae (Aquilaria sinensis), Ulmaceae (Ulmus × hollandica) and Vitaceae (Vitis sp., V. heyneana, V. vinifera) (Farr & Rossman 2023, present study). Distribution: Algeria, Australia, Brazil, Bulgaria, Canada, Chile, China, Colombia, Croatia, Ecuador, Eswatini, Ethiopia, France, Greece, India, Indonesia, Iran, Italy (including Sicily), Japan, Kenya, Mexico, Montenegro, New Zealand, Peru, Portugal (including Madeira), Puerto Rico, Serbia, South Africa (including the Mpumalanga, KwaZulu-Natal, Eastern Cape, Western Cape and Gauteng provinces), South Korea, Spain, Sri Lanka, Switzerland, Taiwan, Thailand, Tunisia, Turkey, Uganda, Uruguay, USA (Arkansas, California, Florida, Georgia, Hawaii, Texas), Venezuela, Zambia and Zimbabwe (Farr & Rossman 2023). Notes: Based on the phylogenetic analyses of the combined ITS- tef1-tub2 dataset, strains CDP 0382 and CDP 1380 clustered with the ex-type and other strains of N. parvum with moderate ML-BS and high PP values (Figure 5). Sequence comparisons with the ex-type strain of N. parvum (ATCC 58191) for ITS, tef1 and tub2 showed 99.58–99.79 %, 99.21 % and 99.05–99.52 %, respectively, sequence similarity, and differences were represented by few base pair changes on ITS 1 and tef1 and tub2 partial sequences. Morphologically, the strains isolated in this study are similar to the holotype of N. parvum from a dead branch of Populus nigra in New Zealand (Phillips et al. 2013) (Figure 15). Considering the strain characterized here (CDP 1380) and the ex-type strain of N. parvum (ATCC 58191), both produce globose, pycnidial conidiomata with ellipsoidal, hyaline and aseptate conidia of remarkably similar mean size (17.80 × 5.57 μm and 17.1 × 5.5 μm, respectively) and equal L / W ratio (3.2) (Phillips et al. 2013) (Figure 15). Nevertheless, although septate hyaline or pigmented old conidia have been described for the ex-type strain (ATCC 58191), CDP 1380 only produced hyaline, aseptate conidia (Crous et al. 2013) (Figure 15). Based on these morpho-molecular analyses, strains CDP 0382 and CDP 1380 are here reported as representing intraspecific variation of N. parvum. Neofusicoccum parvum has not previously been recorded on Arecaceae and thus two new host records are here reported, namely Phoenix dactylifera and P. roebelenii (Table 5). Although Taylor & Hyde (2003) recorded N. parvum (as “ Fusicoccum parvum ”) on Arecaceae hosts, including Trachycarpus fortunei in Australia and China and an unidentified palm in China, no molecular data has been associated with these records, which were identified as N. parvum based solely on morphology. Since morphology is inadequate to define genera or identify species in Botryosphaeriaceae (Phillips et al. 2013, Slippers et al. 2013, 2014, 2017), the validity of this report is yet to be determined. The isolates of N. parvum studied here were recorded from foliar lesions of palms, but pathogenicity has not been tested.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.001
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.229
GPT teacher head0.371
Teacher spread0.142 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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