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Record W6931600010 · doi:10.5281/zenodo.7789904

neurostuff/NiMARE: 0.0.14rc1

2023· other· en· W6931600010 on OpenAlexaff

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2023
Typeother
Languageen
FieldEarth and Planetary Sciences
TopicMarine Biology and Ecology Research
Canadian institutionsMontreal Neurological Institute and HospitalMcGill University
Fundersnot available
KeywordsWorkflowTable (database)Code refactoringDocumentationSoftware

Abstract

fetched live from OpenAlex

What's Changed 🛠 Breaking Changes Support clusters table in Diagnostics by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/765 ### 🎉 Exciting New Features Add save() and load() methods to MetaResult objects by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/771 Incorporate Estimator and Corrector descriptions into MetaResult objects by @tsalo in https://github.com/neurostuff/NiMARE/pull/724 Add cluster_threshold option to Diagnostics by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/777 Add CBMA workflow by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/761 [ENH] rudimentary support for nimads by @jdkent in https://github.com/neurostuff/NiMARE/pull/763 ### 🐛 Bug Fixes Do not zero out one-tailed z-statistics for p-values > 0.5 by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/693 ### Other Changes Support nibabel 5.0.0 by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/762 Link to NeuroStars software support category instead of neuro questions by @tsalo in https://github.com/neurostuff/NiMARE/pull/768 Revert "Do not zero out one-tailed z-statistics for p-values > 0.5" by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/769 [DOC] add note about SDM by @jdkent in https://github.com/neurostuff/NiMARE/pull/764 Replace pandas.DataFrame.append with pandas.concat by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/774 Major refactoring of Diagnostics module by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/776 [DOC] add proper documentation to nimads module by @jdkent in https://github.com/neurostuff/NiMARE/pull/778 Full Changelog: https://github.com/neurostuff/NiMARE/compare/0.0.13...0.0.14rc1

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.016
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Software · Consensus signal: Software
Teacher disagreement score0.366
Threshold uncertainty score0.905

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.016
Meta-epidemiology (narrow)0.0040.004
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0030.002
Science and technology studies0.0020.001
Scholarly communication0.0060.007
Open science0.0110.006
Research integrity0.0040.005
Insufficient payload (model declined to judge)0.3660.531

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.230
Teacher spread0.196 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

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