Parameter optimization for global soil carbon simulations: Not a simple problem
Bibliographic record
Abstract
The files provided here consist of the data, scripts and instructions required for reproducing the results presented in the manuscript Parameter optimization for global soil carbon simulations: Not a simple problem.Abstract from associated paper:Accurate simulation of soil organic carbon (SOC) dynamics by terrestrial biosphere models is hampered by poorly constrained parameters and parameter equifinality, amongst other issues. To address this, we use Bayesian optimization to constrain the 16 SOC-related parameters in the Canadian Land Surface Scheme Including biogeochemical Cycles (CLASSIC). We employed a global sensitivity analysis (Sobol') to develop four parameter sets based upon different sensitivity criteria. We then optimized each set against observed SOC (World Soil Information Service; WoSIS) and soil respiration (Soil Respiration Database; SRDB). Using two different loss functions; one focused on reproducing the observational mean value, and the other explicitly accounting for an estimated observational uncertainty. The best optimized parameter sets from each loss function had an average relative difference of 61%. Thus the choice of loss function impacts what parameter values are deemed optimal and should be considered carefully. The final selected optimal parameter set saw a 12% improvement against WoSIS and SRDB, had global SOC totals in line with literature estimates, and better simulated high-latitude SOC stocks evaluated against the Northern Circumpolar Soil Carbon Database (RMSD: 16.39 vs. 17.61; bias: -5.57 vs. -10.78 kg C m-2) compared to the default CLASSIC parameters. However, some parameters were not well constrained, in particular those of needle-leaf deciduous trees which dominate Siberian boreal forests, a region relatively poorly observed in WoSIS and SRDB. Future work should apply further constraints on the optimization framework and address observational gaps. For more details on CLASSIC and how to run the model see https://cccma.gitlab.io/classic_pages/.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.004 | 0.014 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.001 | 0.002 |
| Open science | 0.001 | 0.001 |
| Research integrity | 0.001 | 0.002 |
| Insufficient payload (model declined to judge) | 0.009 | 0.002 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".