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Record W6949001534 · doi:10.5281/zenodo.12537467

joshspeagle/dynesty: v2.1.4

2024· other· en· W6949001534 on OpenAlexaff

Bibliographic record

VenueEdinburgh Research Explorer (University of Edinburgh) · 2024
Typeother
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsUniversité de MontréalPerimeter InstituteUniversity of Toronto
Fundersnot available
KeywordsFixed pointCode (set theory)Function (biology)Transformation (genetics)Point (geometry)

Abstract

fetched live from OpenAlex

This is bug-fix release. The main user-visible changes is that npdim= option of dynesty is removed. Also because of the code change, you will not be able to resume previous dynesty runs from earlier (<2.1.3) dynesty versions. Detailed changelog is below: Get rid of npdim option that at some point may have allowed the prior transformation to return higher dimensional vector than the inputs. Note that due to this change, restoring the checkpoint from previous version of the dynesty won't be possible) (issues #456, #457) (original issue reported by @MichaelDAlbrow, fixed by @segasai ) Fixed Fix the way the additional arguments are treated when working with dynesty's pool. Previously those only could have been passed through dynesty.pool.Pool() constructor. Now they can still be provided directly to the sampler (not recommended) ( #464 , reported by @eteq, fixed by @segasai ) change the .ptp() method to np.ptp() function as it is deprecated in numpy 2.0 ( #478 , reported and patched by @joezuntz) Fix an error if you use run_nested() several times (i.e. with maxiter option) while using blob=True. ( #475 , reported by @carlosRmelo)

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.015
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Software · Consensus signal: Software
Teacher disagreement score0.302
Threshold uncertainty score0.995

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.015
Meta-epidemiology (narrow)0.0030.004
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0040.007
Open science0.0060.008
Research integrity0.0030.006
Insufficient payload (model declined to judge)0.3020.345

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.098
GPT teacher head0.311
Teacher spread0.213 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations32
Published2024
Admission routes1
Has abstractyes

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Same venueEdinburgh Research Explorer (University of Edinburgh)Same topicSpecies Distribution and Climate ChangeFrench-language works237,207