CACHE Challenge #1 - WDR domain of LRRK2 - Methods, Data, Ranking, Hits, and Guidance Material
Bibliographic record
Abstract
This record contains summaries of the computational methods used, experimental data (csv & xlsx), identification of chemical hits, ranking of hits, visual representations of the computational methods used, and guidance material related to CACHE Challenge 1. More information about the challenge can be found on the CACHE Challenge webpage: https://cache-challenge.org/challenges/predict-hits-for-the-wdr-domain-of-lrrk2. If you use the data or other information contained in this record in the generation of a publication or other public research output, please reference this entry including the DOI in your methods section and data availibility statement (if applicable) and cite the following paper: A paper describing CACHE Challenge 1 has been published in the Journal of Chemical Information and Modeling. The paper can be found here: https://doi.org/10.1021/acs.jcim.4c01267
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.007 | 0.023 |
| Meta-epidemiology (narrow) | 0.002 | 0.002 |
| Meta-epidemiology (broad) | 0.004 | 0.002 |
| Bibliometrics | 0.002 | 0.003 |
| Science and technology studies | 0.003 | 0.001 |
| Scholarly communication | 0.006 | 0.004 |
| Open science | 0.007 | 0.004 |
| Research integrity | 0.004 | 0.004 |
| Insufficient payload (model declined to judge) | 0.346 | 0.294 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".