Table 1 in Three new species of Inosperma (Agaricales, Inocybaceae) from Tropical Africa
Bibliographic record
Abstract
Table 1. List of species, geographic origin and GenBank accession numbers of ITS, 28S and RPB2 sequences used in the molecular analysis; the new species and new combinations are in bold. SpeciesVoucherCountryITS28SRPB2ReferencesAuritella brunnescens Matheny & BougherPBM3174AustraliaKJ702344JQ313571KJ702349Matheny et al. (2017)Auritella dolichocystis Matheny, Trappe & BougherTrappe 24844New South WalesAY380371AY337371Matheny (2005)Auritella fulvella Matheny & BougherBRI:AQ669485AustraliaKJ702355KJ702353KJ702357Matheny et al. (2017)Auritella hispida Matheny & T.W. HenkelTH1009, TH10379CameroonKT378203KT378208KT378215Matheny et al. (2017)Auritella serpentinocystis Matheny, Trappe &Bougher ex Matheny & BougherPBM3188AustraliaKJ729858JQ313559KJ756402Matheny et al. (2017)Auritella spiculosa Matheny & T.W. HenkelMCA7031, TH9866CameroonMF374763KT378206KT378214Matheny et al. (2017)Inosperma adaequatum (Britzelm.) Matheny & Esteve-Rav.JV 16501F, JV11290FFinlandJQ801381JQ815407AY333771Matheny et al. (2020)I. africanum Aïgnon, Yorou & RybergMR00387TogoMN096189MN097881MT770739This studyHLA0361BeninMT534295MT560735HLA0383BeninMT534298MT560733HLA0353BeninMT534299BRF4157BeninMK908843UnpublishedI. akirnum (K.P.D. Latha & Manimohan) Matheny & Esteve-Rav.CAL 1358IndiaNG_057279KY553236Latha and Manimohan (2016)I. apiosmotum (Grund& D.E. Stuntz) Matheny & Esteve-Rav.AU10560, TENN:062779Canada, USAHQ201336JN975022JQ846463Ryberg and Matheny (2012)I. bongardii (Weinm.) Matheny & Esteve-Rav.EL9406SwedenFN550943FN550943UnpublishedI. bulbomarginatum Aïgnon, Yorou & RybergMR00357BeninMN096190MN097882MN200775This studyHLA0373BeninMT534301HLA0389BeninMT534302HLA0417BeninMT534300MT560734PC96082ZambiaJQ801412JN975027Ryberg and Matheny (2012)I. calamistratoides (E. Horak) Matheny & Esteve-Rav.PBM3384AustraliaJQ815415KJ729949Latha and Manimohan (2016)I. calamistratum (Fr.) Matheny & Esteve-Rav.PBM1105USAJQ801386JQ815409JQ846466Pradeep et al. (2016)I. carnosibulbosum (C.K. Pradeep & Matheny) Matheny & Esteve-Rav.TBGT:12047IndiaKT329448KT329454KT32944Pradeep et al. (2016)I. cervicolor (Pers.) Matheny & Esteve-Rav.SJ04024, TURA:4761Sweden, FinlandAM882939AM882939JQ846474Ryberg et al. (2008)I. cookei (Bres.) Matheny & Esteve-Rav.EL70A03SwedenAM882953AM882953Ryberg et al. (2008)I. cyanotrichium (Matheny, Bougher& G.M. Gates) Matheny & Esteve-RavTENN:065729AustraliaJQ815418KJ729948UnpublishedI. flavobrunneum Aïgnon, Yorou & RybergHLA0367BeninMN096199MT536754This studyHLA0372BeninMT534290MT536756I. geraniodorum (J. Favre) Matheny & Esteve-Rav.EL10606SwedenFN550945FN550945Latha and Manimohan (2016)I. gregarium (K.P.D. Latha & Manimohan) Matheny & Esteve-Rav.CAL 1309IndiaKX852305KX852306KX852307Latha and Manimohan (2016)I. lanatodiscum (Kauffman) Matheny & Esteve-Rav.PBM2451USAJQ408759JQ319688JQ846483Latha and Manimohan (2016)I. maculatum (Boud.) Matheny & Esteve-Rav.MR00020SwedenAM882958AM882958Ryberg et al. (2008)I. maximum (A.H. Sm.) Matheny & Esteve-Rav.PBM 2222,UBC F33244USA,CanadaMG953983EU569854Matheny et al. (2009)I. misakaense (Matheny & Watling) Matheny &Esteve-Rav.96234 (PC)ZambiaJQ801409EU569874EU569873Pradeep et al. (2016)I. mutatum (Peck) Matheny & Esteve-Rav.PBM4108, PBM2953USAMG773837JQ994476JQ846488Matheny et al. (2020)I. neobrunnescens (Grund & D.E. Stuntz) Matheny &Esteve-Rav.PBM 2452USAEU569868EU569867Matheny et al. (2009)I. quietiodor (Bon) Matheny & Esteve-Rav.PAM01091310FranceFJ936168FJ936168Larsson et al. (2009)I. rhodiolum (Bres.) Matheny & Esteve-Rav.PAM00090117FranceFJ904176FJ904176Larsson et al. (2009)I. rimosoides (Peck) Matheny & Esteve-Rav.PBM 2459, PBM3311USAJQ801414JQ815426DQ385884Latha and Manimohan (2016)I. rubricosum (Matheny & Bougher) Matheny & Esteve-Rav.PBM3784AustraliaNG_057260KM406230Horak et al. (2015)I. shawarense (Naseer & Khalid) Aïgnon & NaseerFLAS-FS9456PakistanKY616965KY616966Naseer et al. (2018)Inosperma sp.DB166Democratic Republic of the CongoKT461385Bauman et al. (2016)Inosperma sp.PC 96013ZambiaJQ801383JQ815408EU600882Matheny et al. (2009)Inosperma sp.BB3233ZambiaJQ801415EU600885Matheny et al.(2009)Inosperma sp.G1842ZambiaMK278245UnpublishedInosperma sp.TR220_06Papua New GuineaJQ801416JN975017JQ846496Ryberg and Matheny (2012)Inosperma sp.L-GN3aPapua New GuineaJX316732Tedersoo and Põlme (2012)Inosperma sp.Zam07ZambiaFR731653Tedersoo et al. (2011)Inosperma sp.PBM3406AustraliaJQ815431JQ846498UnpublishedInosperma sp.TJB10045ThailandKT600658KT600659KT600660Pradeep et al. (2016)Inosperma sp.PC 96073ZambiaJQ801417EU600870EU600869Matheny et al. (2009)Inosperma sp.PC:96080ZambiaJQ801382UnpublishedI. vinaceobrunneum (Matheny, Ovrebo & Kudzma) Haelew.TENN:062709, PBM 2951USAFJ601813NG_067775JQ846478Matheny and Kudzma (2019)I. viridipes (Matheny, Bougher & G.M. Gates) Matheny & Esteve-Rav.PBM3767AustraliaNR_153168KP171094KM656138Latha and Manimohan (2016)I. virosum (K.B. Vrinda, C.K. Pradeep, A.V. Joseph & T.K. Abraham ex C.K. Pradeep, K.B. Vrinda& Matheny) Matheny & Esteve-Rav.TBGT:753IndiaKT329452KT329458KT329446Pradeep et al. (2016)Mallocybe myriadophylla (Vauras & E. Larss.) Matheny & Esteve-Rav.JV19652FFinlandDQ221106AY700196AY803751Matheny et al. (2007)M. subdecurrens (Ellis & Everh.) Matheny & Esteve-Rav.REH10168USAMH024850MH024886MH577503Matheny et al. (2020)M. terrigena (Fr.) Matheny, Vizzini & Esteve-Rav.EL11704, JV 16431SwedenAM882864AY380401AY333309Matheny and Ammirati (2003); Matheny (2005)M. tomentosula Matheny & Esteve-Rav.PBM4138USAMG773814MK421969MH577506Matheny et al. (2020)M. unicolor (Peck) Matheny & Esteve-Rav.PBM 1481USAAY380403AY337409Matheny (2005)Pseudosperma Pseudosperma lepidotellum (Matheny & Aime) Matheny & Esteve-Rav.TENN066442GuyanaJN642233NG_042597MH577508Matheny et al. (2012)P. pluviorum (Matheny & Bougher) Matheny & Esteve-Rav.BRI:AQ794010, PERTH:08556466AustraliaNG_057259KM406221Horak et al. (2015)Pseudosperma sp.PBM3751AustraliaKP636851KP171053KM555145Pradeep et al. (2016)Pseudosperma sp.TR194-02 (M)Papua New GuineaJQ408793JN975032JQ421080Ryberg and Matheny (2012)Tubariomyces inexpectatus (M. Villarreal, Esteve-Rav., Heykoop & E. Horak) Esteve-Rav. & MathenyAH25500 AH20390SpainGU907095EU569855GU907088Matheny et al. (2009), Alvarado et al. (2010)T. similis Della Magg., Tolaini & VizziniRFS0805SpainGU907096GU907092GU907089Alvarado et al. (2010)T. hygrophoroides Esteve-Rav., P.-A. Moreau & C.E. Hermos.P05112008FranceGU907097GU907094GU907090Pradeep et al. (2016)
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.001 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.002 | 0.002 |
| Science and technology studies | 0.002 | 0.000 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.000 | 0.001 |
| Research integrity | 0.000 | 0.001 |
| Insufficient payload (model declined to judge) | 0.019 | 0.004 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".