Additional file 1 of Cell-based passive immunization for protection against SARS-CoV-2 infection
Bibliographic record
Abstract
Additional file 1. Figure S1: Isolation of clonal transgenic mESC pools. (A) Transfected FS-mESCs constitutively express luciferase from a piggyBac transposon vector for downstream in vivo tracking of cells. Enhanced firefly luciferase expression is linked to an eGFP fluorescent reporter within the expression cassette. TR, terminal repeat; IRES, internal ribosome entry site; pA, polyadenylation. (B) Flow cytometry plots for fluorescence-activated cell sorting of transfected FS-mESC pools. Gates indicate mESCs single-cell sorted for high mCherry and eGFP expression to establish clonal mESCs expressing each SARS-CoV-2 nBio format. The ‘wild-type’ (with respect to any neutralizing biologic transgene) and parental mESCs are mCherrydim from the FailSafeTM locus, in which mCherry is transcriptionally linked to the HSV-TK gene by a 2A peptide in a homozygous manner [42]. Figure S2: Bioluminescence image tracking of mESC transplant recipients. All transplanted mESCs constitutively expressed luciferase transgenes and were thus tracked over the experimental periods. Representative bioluminescence images of two animals per group are shown. (A) Parental FS-mESC and (B) clonal scFv-Fc 33-7 transgenic FS-mESC lines transplanted into B6 recipients (n = 8 and n = 9 animals, respectively). (C) Parental FS-iACT-mESC line and (D and E) clonal transgenic FS-iACT-mESC lines expressing scFv-Fc and Db-Fc-scFv 33-7, respectively, transplanted into NSG and B6 recipients (all n = 5 animals per group). Luc, luciferase. Figure S3: Development of clonal transgenic FS-iACT mESCs. (A) A B6-derived FS-iACT-mESC line (luciferase+, upper expression vector) was separately transfected with the piggyBac transposon expression vectors containing scFv-Fc 33-7 and Db-Fc-scFv 33-7 (lower vector, nBio expression linked to an mCherry fluorescent reporter). (B) Flow cytometry plots for fluorescence-activated cell sorting of the two transfected FS-mESC pools. Upper right gates indicate mESCs single-cell sorted for high mCherry and eGFP expression to establish clonal mESCs expressing the two nBio formats. (C) Images of transgenic clonal mESCs expressing the two different nBio transgenes linked to mCherry. All scale bars are 65 μm. Wt, wild-type. (D) Quantification of scFv-Fc and Db-Fc-scFv 33-7 secreted into the culture supernatant by clonal transgenic FS-iACT-mESCs by anti-human Fc ELISA. Each dot represents a separately generated clone expressing the same nBio format, according to its color. Bars represent the mean clonal secretion of nBio formats ± SEM. Statistical significance was determined by one-way ANOVA test with Tukey’s multiple comparisons test. **P = 0.005; ***P < 0.0001. ns, not significant; ND, not detected. Figure S4: In vivo transplantation of unmodified, parental mESCs. (A-B) Five million parental B6 luciferase+ mESCs were subcutaneously injected into the dorsal flank of mice (A, FS-mESCs into B6 animals, n = 8; B, FS-iACT-mESCs into NSG and B6 animals, n = 5 for each group). (C-D) Flank teratoma growth over the experimental period, measured by calipers. Ganciclovir (GCV) was administered to all mice over the indicated period to stabilize teratomas. Each line represents a single mouse per group. The dashed line indicates the minimum measurable teratoma volume with calipers, while teratomas are still present and palpable. As expected, no SARS-CoV-2 nBios were detected in the plasma of these mice by anti-human Fc ELISA.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.003 | 0.022 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.001 |
| Bibliometrics | 0.002 | 0.003 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.002 | 0.001 |
| Open science | 0.002 | 0.001 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.903 | 0.252 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".