Additional file 1 of Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion
Bibliographic record
Abstract
Additional file 1: Table S1. Whole-genome DNA sequencing data used in this study. Table S2. Assembly statistics for the full and non-redundant assemblies of Salix viminalis. Table S3. Characterization of the different annotation classes for the Salix viminalis assembly. Table S4. Characterization of heterozygous structural variations identified in Chr15. Table S5. List of all genes found on putatively W-linked scaffolds. Figure S1. Whole genome synteny between Salix viminalis assembly and Populus trichocarpa. Figure S2. Genetic markers aligned to chromosome 15 (from Pucholt et al. 2015) on our assembly. Figure S3. Percentage of fully phased haplotypes using 10X Genomic Chromium sequence data. Figure S4. Phylogenetic trees between Z-W gene pairs in the basket willow SDR. Figure S5. Density of repetitive elements across different genomic regions.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.006 |
| Meta-epidemiology (narrow) | 0.002 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.001 |
| Bibliometrics | 0.002 | 0.004 |
| Science and technology studies | 0.002 | 0.000 |
| Scholarly communication | 0.001 | 0.002 |
| Open science | 0.003 | 0.001 |
| Research integrity | 0.001 | 0.002 |
| Insufficient payload (model declined to judge) | 0.743 | 0.188 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".