Additional file 12 of Molecular characterization of Streptococcus suis isolates recovered from diseased pigs in Europe
Bibliographic record
Abstract
Additional file 12. Genomic synteny of Streptococcus suis ST20, ST147, and ST819 strains in comparison to ST16 serotype 9 reference strain GD-0088. Coverage data (innermost circles) and single-nucleotide polymorphisms (SNPs, outermost circles) for strains NSUI00645 (ST20), NSUI00474 (ST147) and NSUI00682 (ST819) are plotted against the ST16 serotype 9 reference strain GD-0088. The similarity in SNP distribution patterns across several areas of the genome between the ST20, the ST147 and the ST819 isolates does not support the hypothesis that ST20 strains are derived directly from an ST16 organism. There were 13934, 16601, 16113 SNPs for strains NSUI00645, NSUI00474, and NSUI00682, respectively, relative to the reference strains. The position of the cps9 locus in the reference genome is provided as a reference.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.002 | 0.019 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.001 |
| Bibliometrics | 0.003 | 0.005 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.002 | 0.002 |
| Open science | 0.002 | 0.001 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.832 | 0.153 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".