Bibliographic record
Abstract
What's Changed Fix flaky group test 1 by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1608 Organization invitation newline fix by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1609 Try to fix staging smoke test failures by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1611 Added in test for hiding version by @fhembroff in https://github.com/dockstore/dockstore-ui2/pull/1601 Remove @material-extended/mde by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1614 added Nextflow Tower and Galaxy as integration partners by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1615 Update PR template for docs by @denis-yuen in https://github.com/dockstore/dockstore-ui2/pull/1616 fixed github app link on new dashboard by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1621 DOCK-2114: Fix Duplicate Links to Entry Discuss Topic by @svonworl in https://github.com/dockstore/dockstore-ui2/pull/1618 added notification badge by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1619 Remove overrides to avoid self-DOSsing by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1627 Add review instructions by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1631 DOCK-1566 create revoke Dockstore token button on My Account by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1628 Retarget dev smoke tests to qa, partial by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1626 Migrating from CircleCI's scheduled workflow to schedules pipelines by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1634 Set size of hits to 0 for tag cloud query by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1639 Upgrade to Angular 14 by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1635 DOCK-2240 Changed colors of each entry widget bubbles on new dashboard by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1638 SEAB-4839 Reset dockstoretestuser4 resources via API by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1637 assign reviewers [skip ci] by @denis-yuen in https://github.com/dockstore/dockstore-ui2/pull/1646 DOCK-2199: Added domain onto the copy block on Copy build info button by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1645 Create codeql.yml by @denis-yuen in https://github.com/dockstore/dockstore-ui2/pull/1649 DOCK-2240: added preview button by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1655 Allow organization admins to interact with invitations by @kathy-t in https://github.com/dockstore/dockstore-ui2/pull/1648 Remove ngx-lite/json-ld dependency by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1657 Don't requests hits for sidebar ES query by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1659 Feature/seab 4852/node18 by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1658 Fix s3 upload by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1660 add checklist item for tests by @denis-yuen in https://github.com/dockstore/dockstore-ui2/pull/1654 update and add warning for Linux by @denis-yuen in https://github.com/dockstore/dockstore-ui2/pull/1652 re-order and recommend github apps for tools by @denis-yuen in https://github.com/dockstore/dockstore-ui2/pull/1661 Update PR template for target branch by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1662 Feature/seab 5078/smoke by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1663 Update to the latest web service by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1665 Replace cypress route() with intercept() by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1666 Update template with security section by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1667 Upgrade to Cypress 9 by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1668 Upgrade to Cypress 10 by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1669 Fix broken smoke tests by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1672 Upgrade to Python 3.11 in check_build_develop by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1670 Upgrade to Cypress 11 by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1671 Add language version search facet and language version column in versions tab by @kathy-t in https://github.com/dockstore/dockstore-ui2/pull/1673 DOCK-1689: added primary indicator and icon by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1664 fix build issue with chromedriver by @denis-yuen in https://github.com/dockstore/dockstore-ui2/pull/1676 DOCK-2209: fix styling for tables in markdown by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1675 DOCK-2229: added type parameter and removed filtering in ui by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1678 Remove duplicate browser-tools install for nightly no auth tests by @kathy-t in https://github.com/dockstore/dockstore-ui2/pull/1679 Groovy Files Missing Syntax Highlighting by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1681 404 Redirects for Remaining Pages - Dock 1170 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1680 Handle backend change to for source file metadata by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1683 UI Relying on Beta TRS API - Dock-2300 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1684 fix height of tos banner mobile by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1686 DOCK-2290: updated navbar dropdown by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1685 Updated UCSCGI and BDC Logos - DOCK-2204/2291 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1687 [ImgBot] Optimize images by @imgbot in https://github.com/dockstore/dockstore-ui2/pull/1689 Feature/seab 5089/cypress12 by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1688 update references to java (linux) by @denis-yuen in https://github.com/dockstore/dockstore-ui2/pull/1690 Bump ua-parser-js from 0.7.31 to 0.7.33 by @dependabot in https://github.com/dockstore/dockstore-ui2/pull/1693 Fix flaky tests. by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1697 Add the Open Data facet by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1698 Updated Dashboard Starred Box - SEAB-5197 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1696 Add message for GH App entry with no versions by @kathy-t in https://github.com/dockstore/dockstore-ui2/pull/1695 SEAB-5183: created notebooks page and added to sitemap by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1692 Small tweaks to README.md. by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1699 DOCK-2213: edit source code to link to primary descriptor by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1694 Change tooltip position to fix a flaky test by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1703 New Dashboard Resizing by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1701 DOCK-2309: moved badge out of dropdown and fixed bug in file tree by @hyunnaye in https://github.com/dockstore/dockstore-ui2/pull/1702 Organization Search Clears After Enter - DOCK-2308 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1705 Tool/Workflow Sidebar Updates - SEAB-5165 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1704 Updated Funding Page by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1706 Don't make org membership requests if logged out by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1708 workflow sidebar resize by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1709 Update smoke tests and Ace editor by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1710 Use Friendly Name for Galaxy Workflows - SEAB-5244 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1707 Add ".." at beginning of workerPath by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1712 SEAB-5108: API-related notebooks UI changes by @svonworl in https://github.com/dockstore/dockstore-ui2/pull/1711 Dashboard UI Fixes - SEAB 4712/SEAB 5198/SEAB 4713 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1713 Fix Broken Smoke Test for Staging/Prod - SEAB-5269 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1715 Collapse Search Panels - Dock 2317 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1714 Corrected typos in dockstore/dockstore-ui2 by @fhembroff in https://github.com/dockstore/dockstore-ui2/pull/1716 [ImgBot] Optimize images by @imgbot in https://github.com/dockstore/dockstore-ui2/pull/1717 Add Dashboard Header & Update Header Styles - SEAB-5199/SEAB-5226 by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1718 Remove deprecated tildes in scss import by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1721 Updated Blue Banner Style by @KimberleyChong in https://github.com/dockstore/dockstore-ui2/pull/1722 SEAB-5270: Ensure UI builds/runs with new entry type information by @svonworl in https://github.com/dockstore/dockstore-ui2/pull/1727 Indicate open on versions table by @coverbeck in https://github.com/dockstore/dockstore-ui2/pull/1723 Redirect to same workflow after refresh if possible by @kathy-t in https://github.com/dockstore/dockstore-ui2/pull/1725 Redirect to registered workflow after quick register by @kathy-t in https://github.com/dockstore/dockstore-ui2/pull/1724 Position tooltip to the left in Actions menu dropdown by @kathy-t in https://github.com/dockstore/dockstore-ui2/pull/1730 Update Entry Box Search
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.001 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.001 | 0.001 |
| Research integrity | 0.000 | 0.001 |
| Insufficient payload (model declined to judge) | 0.045 | 0.040 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; both teacher heads agree on what is shown here.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".