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Record W6976300402 · doi:10.60692/33gyv-y7n72

Autophagy in major human diseases

2021· article· en· W6976300402 on OpenAlexaff

Bibliographic record

VenueGreater South Information System · 2021
Typearticle
Languageen
FieldMedicine
TopicAutophagy in Disease and Therapy
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsGrossmanBiological sciencesResearch centerSection (typography)CancerMedical schoolPublishing

Abstract

fetched live from OpenAlex

Review30 August 2021Open Access Autophagy in major human diseases Daniel J Klionsky Daniel J Klionsky orcid.org/0000-0002-7828-8118 Life Sciences Institute, University of Michigan, Ann Arbor, MI, USA Search for more papers by this author Giulia Petroni Giulia Petroni Department of Radiation Oncology, Weill Cornell Medical College, New York, NY, USA Search for more papers by this author Ravi K Amaravadi Ravi K Amaravadi Department of Medicine, University of Pennsylvania, Philadelphia, PA, USA Abramson Cancer Center, University of Pennsylvania, Philadelphia, PA, USA Search for more papers by this author Eric H Baehrecke Eric H Baehrecke Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, MA, USA Search for more papers by this author Andrea Ballabio Andrea Ballabio orcid.org/0000-0003-1381-4604 Telethon Institute of Genetics and Medicine, Pozzuoli, Italy Department of Translational Medical Sciences, Section of Pediatrics, Federico II University, Naples, Italy Department of Molecular and Human Genetics, Baylor College of Medicine, and Jan and Dan Duncan Neurological Research Institute, Texas Children Hospital, Houston, TX, USA Search for more papers by this author Patricia Boya Patricia Boya orcid.org/0000-0003-3045-951X Margarita Salas Center for Biological Research, Spanish National Research Council, Madrid, Spain Search for more papers by this author José Manuel Bravo-San Pedro José Manuel Bravo-San Pedro Faculty of Medicine, Department Section of Physiology, Complutense University of Madrid, Madrid, Spain Center for Networked Biomedical Research in Neurodegenerative Diseases (CIBERNED), Madrid, Spain Search for more papers by this author Ken Cadwell Ken Cadwell Kimmel Center for Biology and Medicine at the Skirball Institute, New York University Grossman School of Medicine, New York, NY, USA Department of Microbiology, New York University Grossman School of Medicine, New York, NY, USA Division of Gastroenterology and Hepatology, Department of Medicine, New York University Langone Health, New York, NY, USA Search for more papers by this author Francesco Cecconi Francesco Cecconi orcid.org/0000-0002-5614-4359 Cell Stress and Survival Unit, Center for Autophagy, Recycling and Disease (CARD), Danish Cancer Society Research Center, Copenhagen, Denmark Department of Pediatric Onco-Hematology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy Department of Biology, University of Rome 'Tor Vergata', Rome, Italy Search for more papers by this author Augustine M K Choi Augustine M K Choi Division of Pulmonary and Critical Care Medicine, Joan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York, NY, USA New York-Presbyterian Hospital, Weill Cornell Medicine, New York, NY, USA Search for more papers by this author Mary E Choi Mary E Choi New York-Presbyterian Hospital, Weill Cornell Medicine, New York, NY, USA Division of Nephrology and Hypertension, Joan and Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York, NY, USA Search for more papers by this author Charleen T Chu Charleen T Chu orcid.org/0000-0002-5052-8271 Department of Pathology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA Search for more papers by this author Patrice Codogno Patrice Codogno orcid.org/0000-0002-5492-3180 Institut Necker-Enfants Malades, INSERM U1151-CNRS UMR 8253, Paris, France Université de Paris, Paris, France Search for more papers by this author Maria Isabel Colombo Maria Isabel Colombo Laboratorio de Mecanismos Moleculares Implicados en el Tráfico Vesicular y la Autofagia-Instituto de Histología y Embriología (IHEM)-Universidad Nacional de Cuyo, CONICET- Facultad de Ciencias Médicas, Mendoza, Argentina Search for more papers by this author Ana Maria Cuervo Ana Maria Cuervo orcid.org/0000-0002-0771-700X Department of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY, USA Institute for Aging Studies, Albert Einstein College of Medicine, Bronx, NY, USA Search for more papers by this author Vojo Deretic Vojo Deretic Autophagy Inflammation and Metabolism (AIM, Center of Biomedical Research Excellence, University of New Mexico Health Sciences Center, Albuquerque, NM, USA Department of Molecular Genetics and Microbiology, University of New Mexico Health Sciences Center, Albuquerque, NM, USA Search for more papers by this author Ivan Dikic Ivan Dikic orcid.org/0000-0001-8156-9511 Institute of Biochemistry II, School of Medicine, Goethe University, Frankfurt, Frankfurt am Main, Germany Buchmann Institute for Molecular Life Sciences, Goethe University, Frankfurt, Frankfurt am Main, Germany Search for more papers by this author Zvulun Elazar Zvulun Elazar Department of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot, Israel Search for more papers by this author Eeva-Liisa Eskelinen Eeva-Liisa Eskelinen Institute of Biomedicine, University of Turku, Turku, Finland Search for more papers by this author Gian Maria Fimia Gian Maria Fimia orcid.org/0000-0003-4438-3325 Department of Molecular Medicine, Sapienza University of Rome, Rome, Italy Department of Epidemiology, Preclinical Research, and Advanced Diagnostics, National Institute for Infectious Diseases 'L. Spallanzani' IRCCS, Rome, Italy Search for more papers by this author David A Gewirtz David A Gewirtz orcid.org/0000-0003-0437-4934 Department of Pharmacology and Toxicology, School of Medicine, Virginia Commonwealth University, Richmond, VA, USA Search for more papers by this author Douglas R Green Douglas R Green Department of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA Search for more papers by this author Malene Hansen Malene Hansen Sanford Burnham Prebys Medical Discovery Institute, Program of Development, Aging, and Regeneration, La Jolla, CA, USA Search for more papers by this author Marja Jäättelä Marja Jäättelä orcid.org/0000-0001-5950-7111 Cell Death and Metabolism, Center for Autophagy, Recycling & Disease, Danish Cancer Society Research Center, Copenhagen, Denmark Department of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark Search for more papers by this author Terje Johansen Terje Johansen orcid.org/0000-0003-1451-9578 Department of Medical Biology, Molecular Cancer Research Group, University of Tromsø—The Arctic University of Norway, Tromsø, Norway Search for more papers by this author Gábor Juhász Gábor Juhász Institute of Genetics, Biological Research Center, Szeged, Hungary Department of Anatomy, Cell and Developmental Biology, Eötvös Loránd University, Budapest, Hungary Search for more papers by this author Vassiliki Karantza Vassiliki Karantza Merck & Co., Inc., Kenilworth, NJ, USA Search for more papers by this author Claudine Kraft Claudine Kraft orcid.org/0000-0002-3324-4701 Institute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, University of Freiburg, Freiburg, Germany CIBSS - Centre for Integrative Biological Signalling Studies, University of Freiburg, Freiburg, Germany Search for more papers by this author Guido Kroemer Guido Kroemer orcid.org/0000-0002-9334-4405 Centre de Recherche des Cordeliers, Equipe Labellisée par la Ligue Contre le Cancer, Université de Paris, Sorbonne Université, Inserm U1138, Institut Universitaire de France, Paris, France Metabolomics and Cell Biology Platforms, Institut Gustave Roussy, Villejuif, France Pôle de Biologie, Hôpital Européen Georges Pompidou, AP-HP, Paris, France Suzhou Institute for Systems Medicine, Chinese Academy of Medical Sciences, Suzhou, China Karolinska Institute, Department of Women's and Children's Health, Karolinska University Hospital, Stockholm, Sweden Search for more papers by this author Nicholas T Ktistakis Nicholas T Ktistakis Signalling Programme, Babraham Institute, Cambridge, UK Search for more papers by this author Sharad Kumar Sharad Kumar orcid.org/0000-0001-7126-9814 Centre for Cancer Biology, University of South Australia, Adelaide, SA, Australia Faculty of Health and Medical Sciences, University of Adelaide, Adelaide, SA, Australia Search for more papers by this author Carlos Lopez-Otin Carlos Lopez-Otin orcid.org/0000-0001-6964-1904 Departamento de Bioquímica y Biología Molecular, Facultad de Medicina, Instituto Universitario de Oncología del Principado de Asturias (IUOPA), Universidad de Oviedo, Oviedo, Spain Centro de Investigación Biomédica en Red de Cáncer (CIBERONC), Madrid, Spain Search for more papers by this author Kay F Macleod Kay F Macleod The Ben May Department for Cancer Research, The Gordon Center for Integrative Sciences, W-338, The University of Chicago, Chicago, IL, USA The University of Chicago, Chicago, IL, USA Search for more papers by this author Frank Madeo Frank Madeo Institute of Molecular Biosciences, NAWI Graz, University of Graz, Graz, Austria BioTechMed-Graz, Graz, Austria Field of Excellence BioHealth – University of Graz, Graz, Austria Search for more papers by this author Jennifer Martinez Jennifer Martinez Immunity, Inflammation and Disease Laboratory, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA Search for more papers by this author Alicia Meléndez Alicia Meléndez Biology Department, Queens College, City University of New York, Flushing, NY, USA The Graduate Center Biology and Biochemistry PhD Programs of the City University of New York, New York, NY, USA Search for more papers by this author Noboru Mizushima Noboru Mizushima orcid.org/0000-0002-6258-6444 Department of Biochemistry and Molecular Biology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan Search for more papers by this author Christian Münz Christian Münz orcid.org/0000-0001-6419-1940 Viral Immunobiology, Institute of Experimental Immunology, University of Zurich, Zurich, Switzerland Search for more papers by this author Josef M Penninger Josef M

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.078
Threshold uncertainty score0.261

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0040.003
Science and technology studies0.0010.001
Scholarly communication0.0020.003
Open science0.0020.002
Research integrity0.0030.003
Insufficient payload (model declined to judge)0.0780.035

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.250
Teacher spread0.225 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2021
Admission routes1
Has abstractyes

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