Phylogeny and alignment of chytrid single cells and PacBio data from Seto et al. 2023.
Why this work is in the frame
A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.
Bibliographic record
Abstract
Phylogenetic information for Seto et al primary phylogeny of single cells of chytrids fungi. Data supporting:Seto, K., D. R. Simmons, C. A. Quandt, T. Frenken, A. C. Dirks, R. A. Clemons, K. M. McKindles, R. M. L. McKay, and T. Y. James. (2023). A combined microscopy and single-cell sequencing approach reveals the ecology, morphology, and phylogeny of uncultured lineages of zoosporic fungi. <i>mBio, </i>DOI: https://doi.org/10.1128/mbio.01313-2318S-5.8S-28S_alignment.fst=18S-5.8S-28S concatenated alignment in fasta format18S-5.8S-28S_partition.nex= a partition file defining locations of genes in concatenated file18S-5.8S-28S_tree.nwk=the resulting phylogeny in newick format.18S_PacBio_alignment.fasta= 18S sequences of PacBio environmental data plus reference sequences.18S_PacBio.nwk=resulting tree from PacBio dataset.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.001 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.001 | 0.003 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.084 | 0.006 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it