Additional file 12 of Elucidating the role of the gut microbiota in the physiological effects of dietary fiber
Bibliographic record
Abstract
Additional file 12: Figure S5. Associations between the effects on perceived satiety and surrogate endpoints and the dominant fecal microbiota features affected by fiber supplementation. Heatmap shows cubed-root transformed β-coefficients of univariate generalized linear models performed on the compositional (dominant AX-responsive taxa at baseline, shifts, and ex vivo) and functional (fecal propionate and bile acid shifts) features of the gut microbiota. Statistical significance was considered at FDR corrected q values < 0.05. ∆, absolute change from baseline to week 6; %∆, percent change from baseline to week 6; 7αOHCA; 7αOH-3-oxo-4-cholestenoic acid; ApoCA; apocholic acid; ASV, amplicon sequence variant; AUC, area under the curve; AX, arabinoxylan; BL, baseline; HDCA, hyodeoxycholic acid; HOMA-IR, homeostatic model assessment of insulin resistance; MCC, microcrystalline cellulose; OTU, operational taxonomic unit; TNF-α, tumor necrosis factor-α.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.002 | 0.033 |
| Meta-epidemiology (narrow) | 0.002 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.002 |
| Bibliometrics | 0.002 | 0.003 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.002 | 0.002 |
| Open science | 0.003 | 0.001 |
| Research integrity | 0.002 | 0.001 |
| Insufficient payload (model declined to judge) | 0.907 | 0.197 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".