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Record W6977468457 · doi:10.6084/m9.figshare.22705952

Additional file 1 of A comprehensive map of human glucokinase variant activity

2023· article· en· W6977468457 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueFigshare · 2023
Typearticle
Languageen
FieldComputer Science
TopicModeling and Simulation Systems
Canadian institutionsLunenfeld-Tanenbaum Research InstituteUniversity of Toronto
Fundersnot available
KeywordsGlucokinaseAllosteric regulationActivator (genetics)Expression (computer science)Gene

Abstract

fetched live from OpenAlex

Additional file 1: Fig. S1. Expression of GCK variants. Fig. S2. Co-expression of GKRP and GCK. Fig. S3. Imputed map of glucokinase variant activity. Fig. S4. Activity scores mapped onto GCK ribbon diagram. Fig. S5. Evolutionary analysis of GCK homologous sequences. Fig. S6. Correlations between evolutionary conservation and activity scores. Fig. S7. Rosetta ΔΔG heatmaps. Fig. S8. Positions predicted to shift GCK towards the closed conformation are enriched at the allosteric activator site.Please check additional files if captured correctly.Error during converting author query response. Please check the eproofing link or feedback pdf for details

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.886
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.8880.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.087
GPT teacher head0.288
Teacher spread0.201 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it