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Record W6983697972

New and Traditional Density Functional Theory Methods for Unveiling Mechanisms of Green Chemistry Processes

2025· dissertation· en· W6983697972 on OpenAlexafffund

Bibliographic record

VenueeScholarship@McGill (McGill) · 2025
Typedissertation
Languageen
FieldMedicine
TopicPreterm Birth and Chorioamnionitis
Canadian institutionsNanoQuébec (Canada)
FundersNatural Sciences and Engineering Research Council of CanadaMcGill University
KeywordsDensity functional theoryField (mathematics)Work (physics)Functional theory
DOInot available

Abstract

fetched live from OpenAlex

Green chemistry develops processes and products that reduce the use of substances that are harmful for humans and the environment.Computational chemistry can advance green chemistry research by offering tools to model and predict chemical behavior and by facilitating the design of eco-friendly processes and materials.Density functional theory (DFT) is one of the most widely used computational tools in green chemistry that is vital for explaining and predicting reaction pathways, designing catalysts, and assessing environmental impact, all of which advance sustainability in chemical research.The first part of this thesis (Chapter 2) investigates the mechanism of reversible CO 2 capture -a promising green chemistry technology -by a cyclodextrin-based metal-organic framework called CD-MOF-2, which is synthesized from environmentally benign ingredients.By analysing results of DFT modeling and available experimental data, this study describes the nature and structural characteristics of diverse alcohol adsorption sites in CD-MOF-2, capable of binding CO 2 in the irreversible, reversible, and weak regimes.It explains the role of hydrogen bonding environments in modulating CO 2 binding strength at these sites.These findings provides insights into designing solid materials for CO 2 capture or detection by linking acid-base proton equilibrium and hydrogen bonding to CO 2 binding efficiency.The second part of the thesis presents a new DFT method for describing excited electronic states, modeling of which is essential for green chemistry research in photochemistry, photovoltaics, and photocatalysts.Many inaccuracies of time-dependent (TD) DFT, which is most often used to model excited states, arise from its non-variational nature.On the other hand, recently developed variational time-independent DFT must deal with the problem of excited states collapsing onto the ground state during their optimization.We present a computational method that solves the collapse problem while keeping theory simple and computations efficient.This is done in two steps.The first chapter of the development part of the thesis (Chapter 3) presents a method to avoid collapse of molecular orbitals within a single electronic state during the self-consistent field (SCF) optimization.This method, called variable-metric SCF, is applied to describe the electronic ground state.The main idea of the method is to allow nonorthogonal molecular orbitals and then penalize linearly dependent orbitals with a term that is added to the DFT energy functional.Variable-metric SCF method allows to use molecular orbital coefficients as independent variables in a direct, unconstrained minimization.It is shown that variable-metric SCF equations are simple and can be solved efficiently even with a basic preconditioned conjugate gradient algorithm for various molecular and solid-state systems, including challenging narrow gap systems and singlet diradicals.The second chapter of the development part (Chapter 4) extends variable-metric SCF to multiple electronic states by adding a new term that penalizes overlapping states, not just overlapping molecular orbitals.The resulting variable-metric time-independent DFT method treats both ground and excited states variationally and equally, improving the accuracy of modeling charge-transfer and two-electron excited states of various molecules compared to TDDFT.The variational nature of variable-metric time-independent DFT also allows to greatly simplify the evaluation of atomic forces, which will lead to more efficient non-adiabatic molecular dynamics simulations of green photochemical and photocatalytic processes.Going through the PhD path has been a truly life-changing experience for me, and this milestone would not have been possible to reach without the support and guidance I received from many people.First and foremost, I am deeply grateful and want to extend my heartfelt thanks to my supervisor, Dr. Rustam Z. Khaliullin, for his constant

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.469
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.282
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes2
Has abstractyes

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