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Record W7000679209

Fruit trees and phytoplasmas: a well settled association

2017· article· en· W7000679209 on OpenAlexaboutno aff

Bibliographic record

VenueArchivio istituzionale della ricerca (Alma Mater Studiorum Università di Bologna) · 2017
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPhytoplasmas and Hemiptera pathogens
Canadian institutionsnot available
Fundersnot available
KeywordsPhytoplasmaRibosomal RNAGenomeGenePhloemRibosomal DNATaxonomy (biology)PhylogeneticsPhylogenetic tree
DOInot available

Abstract

fetched live from OpenAlex

The discovery, just fifty year ago, of a new group of plant pathogens related to bacteria led to the finding of polymorphic prokaryotes, located in the phloem of many plant species affected by yellows-type diseases believed to be caused by viruses, considering their infectious nature, and transmission by insects. The first retrievable records of phytoplasma related symptoms in fruit trees were presented during the first ICVF meeting (1954) when these pathogens were not know. In the last years molecular data have provided considerable insights into phytoplasma molecular diversity, and genetic interrelationships; significant taxonomic progress has been achieved by the study of the 16S ribosomal gene and other conserved genes allowing designation of 33 ribosomal groups and 41 ‘Candidatus Phytoplasma’ species. However, there is a gap between taxonomy and diseases since it is not uncommon that the same disease is associated with molecularly differentiable phytoplasmas, and with more than just one phytoplasma especially in woody host plants. Full sequencing of genomes of five phytoplasmas and a number of draft sequences provided the knowledge about putative biochemical pathways, confirming that phytoplasmas are very special microorganism lacking relevant bacterial features such as cell wall, mobility, key enzymes and pathways. They appears to have a small efficient chromosome and tricky metabolisms, allowing them to a trans kingdom life of interaction that often increase activity of their hosts such as enhancing insect fitness, plant shoot production, morphology and plant life cycles. They seems to preparing to become permanent cell hosts; however they are still far from loose independence and freedom as can also act as very dangerous pathogens. Epidemiologic studies of phytoplasma-associated diseases allow confirming the possibility to molecularly identify strains that have the most important roles in fruit tree disease outbreaks. These diseases are mainly widespread presence Europe and include apple proliferation, pear decline, and European stone fruit yellows tentatively classified as ‘Ca. P. mali’, ‘Ca. P. pyri’ and ‘Ca. P. prunorum’, all belonging to ribosomal group 16SrX. Apple proliferation, only reported in Europe is one of the most important disease of this species reducing size, weight and quality of fruit. Although it affects most or all varieties of apple, it is associated with relatively genetically homogeneous phytoplasmas and vectored by the psyllids Cacopsylla picta, C. melanoneura and the leafhopper Fieberiella florii. Pear decline, firstly reported in western USA and Canada, is of relevant importance in European pear orchards and was recently identified also in South Amrica. Main symptoms enclose poor shoot and spur growth, dieback, premature reddening and upper rolling of leaves, reduced leaf and fruit size and number. Insect vectors are C. pyricola and C. pyri. European stone fruit yellows is a disease seriously affecting apricot, plum, and peach; apricot and Japanese plum. Although symptom severity is fairly variable, infected trees show typical yellows accompanied by leaf roll followed by leaf reddening, and often winter sprouting. ‘Ca. P. prunorum’ vectored by C. pruni is the associated organism, together with some other phytoplasma among which the “stolbur” (‘Ca. P. solani’, 16SrXII-A) is very often present. Severe epidemic of ‘Ca. P. phoenicium (16SrIX) are also recently reported in some areas of the Arabian peninsula. \nThe phytoplasma growth in artificial media achieved from periwinkle shoots and from field infected plants should allow the confirmation of the molecular information on phytoplasma biology and possibly pathogenicity gained in the last years. This knowledge will help in defining feasible solutions to reduce the phytoplasma disease impact and in devising the best management strategies, especially in fruit tree crops considering their several years’ permanence in orchards.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.004
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.002
Science and technology studies0.0010.002
Scholarly communication0.0030.003
Open science0.0000.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.212
Teacher spread0.195 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2017
Admission routes1
Has abstractyes

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