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Record W7008573589

Characterization of astrocytes derived from fibroblasts of patients with amyotrophic lateral sclerosis

2019· dissertation· en· W7008573589 on OpenAlexafffund

Bibliographic record

VenueeScholarship@McGill (McGill) · 2019
Typedissertation
Languageen
FieldMedicine
TopicAmyotrophic Lateral Sclerosis Research
Canadian institutionsMcGill University Health Centre
FundersMcGill University
KeywordsAstrocyteAmyotrophic lateral sclerosisNestinNeurogliaMessenger RNACentral nervous systemSOD1Glial fibrillary acidic protein
DOInot available

Abstract

fetched live from OpenAlex

Amyotrophic lateral sclerosis (ALS) is a fatal neuromuscular degenerative disease, targeting the motor neurons of the brain stem, motor cortex and spinal cord.Various lines of evidence have shown that glial cells contribute to disease development and progression.We derived astrocytes from fibroblasts of patients with familial ALS associated with SOD1 mutation and compared them to astrocytes derived from fibroblasts of age-and sex-matched controls.In order to assess astrocytic maturity, we compared the mRNA expression of astrocytic markers in astrocytes derived from three different protocols to that of human fetal astrocytes (HFA).Protocol 1 incorporated 10 weeks of astrogenesis.Protocol 2 incorporated 3 weeks of neurogenesis and 10 weeks of astrogenesis, and protocol 3 incorporated 2 weeks of astrogenesis.Our data show that astrocytes from all three protocols are similar in mRNA expression of astrocytic markers to HFA.However, morphologically, astrocytes from protocol 1 and 2 had astrocyte-like projections and therefore looked more like astrocytes compared to astrocytes from protocol 3. Next, we derived astrocytes from ALS patients, using protocol 2 and compared them to their age-and sexmatched controls.We found that the mRNA levels of EAAT2 and NESTIN were lower and the mRNA levels of glutamine synthetase, connexin43 and TGFB1 were higher in ALS astrocytes compared to their controls.Since the phenotypes observed in this study corroborate with previous literature exploring the role of astrocytes in ALS, these astrocytes may offer a system in which ALS can be studied in human cells.unconditional love and support through all the uncertainty and hardships that this career path brings.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.227
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes2
Has abstractyes

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