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Record W7014212696

Optimization of Lectin Biotinylation for the Assessment of Therapeutic Protein Glycosylation

2024· other· fr· W7014212696 on OpenAlexfundno aff

Bibliographic record

VenuePolyPublie (École Polytechnique de Montréal) · 2024
Typeother
Languagefr
Field
Topic
Canadian institutionsnot available
FundersFonds de recherche du Québec – Nature et technologiesNatural Sciences and Engineering Research Council of Canada
KeywordsBiotinylationLectinGlycosylationSurface plasmon resonanceFucosylation
DOInot available

Abstract

fetched live from OpenAlex

RÉSUMÉ: La glycosylation est un attribut de qualité critique pour les protéines thérapeutiques, et est également un biomarqueur de plusieurs maladies humaines. Pour évaluer l’état de glycosylation des protéines, les lectines sont souvent utilisées car leurs spécificités pour les sucres sont bien caractérisées. Les lectines ont été proposées pour la détection et la caractérisation de plusieurs produits biothérapeutiques, tels que les vaccins viraux et les anticorps monoclonaux. Dans les tests à base de lectines, il est commun de conjuguer celles-ci avec de la biotine. Les étiquettes à base de biotine permettent aux lectines de recruter des complexes à base de streptavidine capables de générer des signaux, ou de capturer des lectines sur des surfaces de biocapteurs fonctionnalisées avec de la streptavidine. Dans ce travail, nous explorons l’application de lectines pour la détection de produits biothérapeutiques dans les biocapteurs à base de résonance de plasmons de surface et dans des tests à base d’enzymes liés aux lectines. En particulier, on démontre que le ratio de conjugaison biotine-lectine peut avoir un impact important sur la performance de ces deux tests à travers la modulation de l’interaction lectine-streptavidine. Dans les biocapteurs à base de résonance de plasmons de surface, une biotinylation excessive peut réduire la capture à des surfaces de streptavidine et peut modifier les cinétiques d’interactions entre les lectines et des glycoprotéines. Dans le test ELLA (« enzyme-linked lectin assay »), un haut niveau de conjugaison amplifie le signal spécifique et baisse la limite de détection. A la lumière de ces résultats, des recommandations sont formulées quant au niveau optimal de biotinylation des lectines selon l’application envisagée. ABSTRACT: Protein glycosylation is a crucial attribute for therapeutic proteins and a biomarker for many human diseases. For assessing protein glycosylation, lectins are often used as they have well characterized sugar specificities. Lectins have been proposed for the detection and characterization of many biotherapeutic products, including viral vaccines and monoclonal antibodies. In lectin-based assays, it is common to tag lectins with biotin. Biotin-tags allow lectins to recruit signal generating streptavidin-based compounds or capture lectins to streptavidin-functionalized biosensing surfaces. In this work, we explore the use of lectins for the detection of biotherapeutic products in surface plasmon resonance and the enzyme-linked lectin assay. In particular, we demonstrate that the biotin-lectin conjugation ratio can have a significant impact on the performance of these two assay types, via the modulation of the lectin-streptavidin interaction. In surface plasmon resonance assays, excess biotinylation can reduce capture to streptavidin surfaces and modify lectin-glycoprotein binding kinetics. In the enzyme-linked lectin assay, high biotin conjugation amplifies the specific signal and lowers the limit of detection. Finally, we present a workflow for the assessment of optimal lectin biotin conjugation ratio.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.275
Teacher spread0.260 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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