Assessing microbial communities in agricultural soils and their response to winter freeze-thaw at the field-scale
Bibliographic record
Abstract
This thesis examines soil microbial communities at a long-term research site in Elora, Ontario aiming to link best management practices to soil greenhouse gas production. The goal was to obtain measurements of the microbial community in contrasting management practices. An in-depth analysis was conducted to understand how field-scale variability in freezing affects the microbial communities responsible for N2O emissions from soil. Soil was sampled over freeze-thaw (FT) cycles, and separated into frozen and thawed soils where N-cycling microbial communities were quantified alongside field-N2O emissions. Lasting differences from cover crops and tillage in both the bacterial and fungal communities were present, indicating sensitivity of the microbial community to aboveground change. Functional genes and transcripts representative of nitrification and denitrification were quantified in both thawed and frozen portions of soil throughout multiple freeze-thaws within the sampling period, with soil freezing and time playing the biggest role in shaping these communities.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.001 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".