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Record W7018560918

A discipline-specific R manual improves students' skills and confidence in their chosen field

2023· article· en· W7018560918 on OpenAlexaboutno aff

Bibliographic record

VenueScholarship@Western (Western University) · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics, Bioinformatics, and Biomedical Research
Canadian institutionsnot available
Fundersnot available
KeywordsField (mathematics)SoftwareCoding (social sciences)Statistical analysisComputer softwareCurriculumTeaching method
DOInot available

Abstract

fetched live from OpenAlex

Students enter the university classroom with varying levels of quantitative skills. This includes varying numerical proficiency and varying levels of proficiency with coding languages. As data science becomes more prevalent in scientific research, and use of statistical programming software is increasingly common, there have been growing calls to increase exposure to programming skills in undergraduate-level courses. ‘R’ is currently the most popular statistical programming software across ecology and evolutionary biology. The initial steep learning curve of R and the limited availability of resources for beginners result in an incompatibility between resources and students’ needs. To address this gap, we created a student-facing and department-specific R manual for use as a learning and teaching resource. Through quantitative surveys in a large-enrollment second year ecology course, we assess the effectiveness of the manual and R-based lab activities in improving student R skills and confidence. We also conducted a survey of graduate student teaching assistants and faculty who indicated that the manual meets the current learning objectives of the department. Our results highlight the variation in confidence and skills among second-year students and show that lab training and the R manual helped to close learning and skills gaps for students lacking previous experience. These results emphasize the importance of early exposure to statistical programming opportunities and activities early in undergraduate science courses to help increase skills and confidence among students. This research was approved by the University of Toronto’s Social Sciences, Humanities and Education Research Ethics Board.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.010
metaresearch head score (Gemma)0.035
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.023
Threshold uncertainty score0.078

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0100.035
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0010.001
Scholarly communication0.0030.002
Open science0.0020.003
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0230.016

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.047
GPT teacher head0.343
Teacher spread0.296 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

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