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Record W7023848618

POLR3-related leukodystrophy: From exploring novel genetic causes and investigating clinical features to expanding the spectrum of disease

2022· dissertation· en· W7023848618 on OpenAlexafffund

Bibliographic record

VenueeScholarship@McGill (McGill) · 2022
Typedissertation
Languageen
FieldComputer Science
TopicUser Authentication and Security Systems
Canadian institutionsMcGill University Health Centre
FundersNational Institutes of HealthFondation des EtoilesFondation du Grand défi Pierre LavoieEuropean Molecular Biology LaboratoryCanadian Institutes of Health ResearchCompute CanadaFonds de Recherche du Québec - SantéUniversité LavalBC Children's HospitalDeutsche ForschungsgemeinschaftChildren's Hospital FoundationMcGill University Health CentreMcGill UniversityChildren's Mercy HospitalFaculty of Medicine, McGill UniversityChildren's Discovery InstituteBundesministerium für Bildung und ForschungTeva Pharmaceutical Industries
KeywordsDiseaseIdentification (biology)Feature (linguistics)PopulationGenome
DOInot available

Abstract

fetched live from OpenAlex

Leukodystrophies encompass a spectrum of inherited neurological disorders associated with central nervous system white matter abnormalities, impacting either the development or maintenance of the myelin sheath.Within this disease group, hypomyelinating leukodystrophies are characterized by a substantial lack of myelin deposition during development and are typically diagnosed using brain magnetic resonance imaging (MRI) patterns, along with molecular genetic testing.Advances in genetic sequencing technologies have facilitated the discovery of an abundance of novel genes associated with hypomyelinating leukodystrophies over recent years.Although this has led to the genetic diagnosis of many patients with rare hypomyelinating disorders, there remain a proportion of patients whose causal genes remain unidentified.Using next generation sequencing, we sought to investigate the genetic etiology of a cohort of patients presenting with hypomyelination on MRI, but without an identified genetic cause.Genetic variants for each patient were custom filtered and evaluated for pathogenicity using the American College of Medical Genetics guidelines.Genetic diagnoses were identified in 41% (7/17) of patients.In one patient, pathogenic variants in the gene POLR3K were identified, including a large deletion and a missense variant, leading to the third report worldwide of an individual harbouring pathogenic variants in this gene and a hypomyelinating phenotype.One of the most common types of hypomyelinating leukodystrophies is RNA polymerase III-related hypomyelinating leukodystrophy (POLR3-HLD).As an autosomal recessive disorder, POLR3-HLD is caused by biallelic pathogenic variants in specific genes encoding for subunits of the transcription enzyme RNA polymerase III, including POLR3A, POLR3B, POLR1C, and POLR3K.POLR3-HLD is also known as 4H leukodystrophy due to the commonly associated combination of neurological and non-neurological features, including hypomyelination, hypodontia, and hypogonadotropic hypogonadism.As endocrine and growth abnormalities are often seen in this patient population, we sought to systematically investigate and characterize these features in a large cohort of patients with genetically-confirmed POLR3-HLD.We performed an international cross-sectional study on 150 patients to evaluate endocrine and growth measures, as well as neurological and non-neurological features.Pubertal abnormalities and short stature were found to be the most common endocrine features, and thyroid abnormalities were reported in a ABSTRACT ______________________________________________________________________________ 2 portion of patients.Next, we aimed to expand the clinical and molecular spectrum of POLR3-HLD by investigating a cohort of patients with an extremely severe phenotype compared to the typical disease form.Clinical, MRI, and genetic features for all six patients were reviewed.Each had an early disease onset in the first few months of life, presenting with developmental delay, failure to thrive, and severe dysphagia.On MRI, an atypical pattern of progressive basal ganglia and thalamic abnormalities was identified.Genetically, each patient harboured similar pathogenic variants in POLR3A, including a variant leading to a premature stop codon on one allele, and in trans, a splicing variant which was investigated using in vitro studies to identify aberrant splicing transcripts.To further explore this novel phenotype, pathology samples from three deceased children of different ages were examined, revealing a progressive disease with involvement of the dorsal striatum, globus pallidus, and thalamus.Overall, the identification of genotype-phenotype correlations and study of disease progression provide insight into the complex pathophysiology underlying POLR3-HLD.As a whole, these studies expand understanding of the genetic basis, clinical presentation, and disease pathophysiology of hypomyelinating disorders, thus laying the knowledge foundation necessary for the development of future therapeutic approaches.And finally, to my friends and family near and far, I couldn't have reached the end of this degree without your constant support.To my parents, Diana and David, for being the most encouraging, loving, and supportive parents I could have ever asked for.You have shaped me into the individual I am today, and I am so thankful for your never-ending encouragement to follow my dreams.Thank you for being there through the ups and downs, and for inspiring me to put forth my best effort in everything I do.To my brothers, Michael and Christopher, my grandparents, Marlene, Zdenka, and Stefan, as well as my aunts, uncles, and cousins, you are always there for me when I need it, and I am thankful for all of your love and support.To my lifelong friends, Katie, Taylor, and Marissa, for cheering me on from the sidelines and always being in my corner.And to Dylan, we started this journey in Montral, and even from afar you have been there every step of this degree, from listening to my endless presentations to making sure I never miss an Oxford comma, and being an "extended brain" when I need to think out a new idea or plan.Your friendship is invaluable, thank you for always being there and for making me feel like my potential has no limits.To all my family and friends, I am eternally grateful for all of your love and support, you mean so much to me.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.793
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0000.001
Open science0.0020.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.052
GPT teacher head0.291
Teacher spread0.239 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes2
Has abstractyes

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