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Record W7028547987

Falsely elevated C4-carnitine as expression of glutamate formiminotransferase deficiency in tandem mass spectrometry newborn screening.

2006· article· en· W7028547987 on OpenAlexaboutno aff

Bibliographic record

VenueFlorence Research (University of Florence) · 2006
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolism and Genetic Disorders
Canadian institutionsnot available
Fundersnot available
KeywordsTandem mass spectrometryGlutamate receptorMass spectrometryGene expression
DOInot available

Abstract

fetched live from OpenAlex

Falsely elevated C4-carnitine as expression of glutamate formiminotransferase deficiency in tandem mass spectrometry newborn screeningAfter the first report by Millington et al., 1 the development of electrospray tandem mass spectrometry (MS/MS) has enabled in recent years the introduction of expanded newborn screening programs in many countries.2,3 This has led to an increase in the capacity to detect rare metabolic disorders during the neonatal period.The increase of the only C4-acylcarnitine, as detected by tandem mass spectrometry in newborn screening, is reported to be related to short chain acyl-CoA dehydrogenase (SCAD) deficiency (butyrylcarnitine) or isobutyryl-CoA dehydrogenase (IBD) deficiency (isobutyrylcarnitine).4 Expanded Newborn Screening Pilot Program using MS/MS is being conducted in three provinces of Tuscany since January 2001, and, being officially mandated by a legislative action, screens all babies born in Tuscany since November 2004 (approximately 30 000/year) for selected acylcarnitines and amino acids.We report on a newborn in which the screening showed an isolated apparent elevation of C4-acylcarnitine usually associated with SCAD or IBD deficiency.A careful evaluation of the results and the subsequent biochemical investigations allowed us to demonstrate that this alteration was due to accumulation of formiminoglutamate (FIGLU).Acylcarnitines and amino acids in all dried blood spots from newborn were analysed as butyl esters with the same methodology described by la Marca et al. 5 An Applied Biosystems-Sciex (Toronto, Canada) API 4000 triplequadrupole mass spectrometer equipped with a Turbo V-Spray source was employed.MS and MS/MS spectra were collected in continuous flow mode by connecting the infusion pump directly to the Turbo V-Spray source.A standard solution of 1 ng/µl of each amino acid and acylcarnitine in water : acetonitrile (30 : 70) containing 0.05% formic acid was infused at 5 µl/ min.Measurements on samples were performed by using a Series 1100 Agilent Technologies (Waldbronn, Germany) CapPump coupled to an Agilent Micro ALS autosampler, both fully controlled from the API 4000 data system.Experimental flow rate was 70 µl/ min using water : acetonitrile (30 : 70) containing 0.05% formic acid.The eluent from the column was directed to the Turbo V-Spray probe.The acquired data were processed using the Analyst 1.4.1 proprietary software including the 'Explore' option (for spectral interpretation) and the ChemoView software (for quantitative information generation).The child was born from consanguineous Pakistani parents (first cousins) after five uneventful pregnancy.The family history was unremarkable: two brothers and two sisters were normal.The delivery was made by caesarean section because of foetal distress at the 36th week of gestation.At birth, the APGAR score was 9 I and 10 V , weight 2700 g, length 49 cm, and head circumference 33 cm.Since the first days of life, the infant presented poor sucking and brought up milk.Expanded newborn screening for metabolic diseases by tandem mass spectrometry showed levels of C4-acylcarnitine mildly increased (using a cutoff value of the mean C 2SDs).The physical examination at 20 days of life showed normal cardiac, respiratory and abdominal findings and no dysmorphic features.Increased tendon reflex and mild axial hypotonia with hypertonia of legs were present.EEG showed diffuse paroxystic activity.Abdominal and cerebral ultrasound investigations as well as brain auditory-evoked potentials (BAEPs) and visual-evoked potentials (VEPs) were normal.Fundus oculi, ECG and cardiac ultrasound were normal.Laboratory investigations revealed normocytic anaemia (Hb 10,9, MCV 80,1 fl).Plasma and

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How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.001
Science and technology studies0.0010.002
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.269
Teacher spread0.247 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2006
Admission routes1
Has abstractyes

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Same venueFlorence Research (University of Florence)Same topicMetabolism and Genetic DisordersFrench-language works237,207