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Record W7042394365

PEG-gebundene Oligosaccharide als biomolekulare Erkennungsstrukturen auf Grenzflächen

2008· article· en· W7042394365 on OpenAlexaboutno aff

Bibliographic record

VenueRWTH Publications (RWTH Aachen) · 2008
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGlycosylation and Glycoproteins Research
Canadian institutionsnot available
Fundersnot available
KeywordsBiomaterialSubstrate (aquarium)GlycanAdhesionSurface modificationGlycoproteinLigand (biochemistry)OligosaccharideAcceptorCell adhesion
DOInot available

Abstract

fetched live from OpenAlex

The targeting of cells to biomaterial surfaces can be achieved by functionalization of the interface with specified biomolecular recognition structures. The aim is the production of biohybrid systems with nano- and micro-structured surfaces to control the molecular mechanism of the cell. The cell surface is very “sweet” and is surrounded by a thick layer of sugars. These sugar chains are arranged like antennas which act as recognition structures and information carriers. One important glycan structure is poly-N-acetyllactosamine (poly-LacNAc) that fulfils the major function during inter- and intracellular communication events. This sugar structure has been identified as important ligand for galectin-mediated cell adhesion to extra-cellular matrix glycoproteins (laminin, fibronectin). Therefore poly-LacNAc shall be synthesized by chemo-enzymatic methods, coupled to specialized surfaces and characterized for its usage in the biomaterial research. The first step of the synthesis strategy comprised the chemical synthesis of beta-glycosides of GlcNAc to facilitate a controlled coupling onto chemically functionalized surfaces (cooperation with Prof. Dr. Kren, ASCR, Czech Republic). The best result could be reached with the product beta-D-GlcNAc-linker-NH2-tBoc which can be easily attached to amino-reactive surfaces. In a further step the glycoside was converted as acceptor substrate by human and bacterial beta-1,4-galactosyltransferases for the production of LacNAc in a biocatalytical one-pot-reaction (cooperation with Dr. W. W. Wakarchuk, NRC, Canada). The fusion protein His6-propeptide-beta-4GalT-1 turned out to be the most productive enzyme. It showed a preference for hydrophobic substrates by quantitative conversion of 5 mM acceptor substrate in 3 h. The enzymatic synthesis of poly-LacNAc structures was accomplished by the combination of His6-propeptide-beta-4GalT-1 with beta-3GlcNAcT from Helicobacter pylori. Kinetic data and conditions for an optimal conversion of the hydrophobic substrates were determined. Even more, the produced defined poly-LacNAc structures were used as acceptor substrates for further enzymatic modifications corresponding to nature or for a specific enzymatic labelling with UDP-Gal-biotin. The functionalised LacNAc and poly-LacNAc structures could be easily purified by solid phase extraction. A deprotection step yielded the amino-terminating sugar structures which were subsequently coupled to functionalised microtiter plates. The functionalisation of amino reactive microtiter plates was a suitable small scale test system. The detection of the immobilized structures could be done with commercially available lectins or with the recombinantly expressed fungal galectin His6CGL2. Even more, an enzymatic procedure could be established to label sugar structures in a specific and more sensitive way. Finally, the binding of extracellular glycoproteins (laminin, fibronectin) to the functionalized microtiter plates could be shown. After establishing the chemical and enzymatic synthesis of the poly-LacNAc structures, their immobilization onto surfaces and their detection work should be started with biomaterial surfaces. Therefore functionalization experiments were done with PEG-star surfaces in a close cooperation with Prof. Dr. Möller (DWI, RWTH Aachen). It could be shown that it was not only possible to immobilize the glycans onto the surface but also to be build up an artificial extracellular matrix via the galectin His6CGL2 with collagen IV, fibronectin and laminin. Finally, these biofunctionalized surfaces could be used for targeted cell adhesion by poly-LacNAc- and galectin-mediated binding of collagen IV.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.546
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.286
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2008
Admission routes1
Has abstractyes

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