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Record W7045975959

Complex Interplay of Mercury and Arsenic with Sulfur and Selenium in Biological Systems

2023· dissertation· en· W7045975959 on OpenAlexfundno aff

Bibliographic record

VenueUniversity Library (University of Saskatchewan) · 2023
Typedissertation
Languageen
FieldPhysics and Astronomy
TopicMagnetic confinement fusion research
Canadian institutionsnot available
FundersSLAC National Accelerator LaboratoryBasic Energy SciencesNational Institute of General Medical SciencesBiological and Environmental ResearchNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health ResearchCanada Research ChairsOffice of ScienceNational Institutes of HealthCanadian Light SourceU.S. Department of Energy
KeywordsMercury (programming language)ArsenicSeleniumCinnabarMethylmercurySulfurX-ray absorption spectroscopyArsenite
DOInot available

Abstract

fetched live from OpenAlex

Mercury and arsenic compounds are hazardous, known for their extreme toxicity among heavy metals and metalloids, and prevalent in the environment with potential for human exposure. The magnitude and severity of the health issues they cause endanger the lives exposed to them. Therefore, a detailed molecular understanding of the complex interplay of arsenic and mercury with sulfur and selenium is crucial to discerning the mechanism behind the toxicity of arsenite and mercury compounds. While certain mercury and arsenic species are known to inhibit selenoenzymes, namely thioredoxin reductases (TrxRs), the molecular level interactions remain unexplored. To gain deeper insights into such interactions, this dissertation employed synchrotron X-ray absorption spectroscopy (XAS) alongside computational chemistry techniques to characterize the chemical coordination of arsenic and mercury in sulfur- and selenium-containing systems relevant to their toxicity. High-energy resolution fluorescence detected XAS (HERFD-XAS) and computational studies informed on the formation of various mercury-thiolate complexes, laying the groundwork for a deeper understanding of the toxic effects of mercury. Furthermore, the analysis of mercury-thiol interactions prompted additional studies of the oxidation process of the thiols themselves. To achieve this, a stopped-flow reaction system was introduced which can be used to examine a wide range of relevant thiol-containing reaction processes. The initial results from this system showcase the complexity of the oxidation of glutathione with hydrogen peroxide. Extended X-ray absorption fine structure (EXAFS) together with density functional theory (DFT) studies of TrxR1 interacting with methylmercury and inorganic mercury provided detailed structural characterization of the modes of mercury coordination in selenoenzymes, informing on toxic effects. The same approach was instrumental in investigating TrxR1 binding to arsenite, the active compound of the chemotherapy drug Trisenox. The binding of mercury and arsenic to selenium from TrxR1 highlights the susceptibility of selenium as a target for these toxic compounds. This dissertation presents compelling evidence on the involvement of biological thiols and TrxR1 in mercury toxicity, while also identifying TrxR1 as targets for arsenite. Overall, this research lays the foundation for a deeper understanding of mercury toxicity and the development of future anticancer drugs based on less toxic alternatives to arsenite, focusing on TrxRs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.200
Teacher spread0.189 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

Explore more

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