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Record W7046209120

The c-Rel transcription factor regulates host defence against neurotropic and cardiac virus infections

2021· dissertation· en· W7046209120 on OpenAlexfundno aff

Bibliographic record

VenueeScholarship@McGill (McGill) · 2021
Typedissertation
Languageen
FieldPhysics and Astronomy
TopicMagnetic confinement fusion research
Canadian institutionsnot available
FundersGenome Canada
KeywordsTranscription factorImmune systemVirusTranscription (linguistics)Host (biology)Innate immune system
DOInot available

Abstract

fetched live from OpenAlex

Infection with herpes simplex virus 1 (HSV-1) can result in an acute inflammatory condition of the brain called herpes simplex encephalitis (HSE).While relatively rare, HSE is the most common form of sporadic viral encephalitis worldwide.On the other hand, coxsackievirus B3 (CVB3) can establish productive infection in the heart, and is the most frequent cause of viral myocarditis.The onset of both HSE and CVB3-induced myocarditis is influenced in part by host genetics.While the genetic causes of viral myocarditis in humans are unclear, recent studies have established that inborn single gene errors are responsible for disease onset in cases of childhood HSE, where most discovered mutations compromise antiviral type I interferon signaling in the brain.Mouse models of viral infection have been instrumental to define the many layers of genetic regulation that govern host defence responses.To identify novel genetic determinants of HSE that may extend beyond cell-intrinsic interferon signaling, we screened N-ethyl-N-nitrosourea (ENU)-mutagenized mice for susceptibility to HSE, and have discovered a homozygous C307X mutation in the reticuloendotheliosis oncogene (Rel), encoding a premature truncation of the NF-B transcription factor subunit c-Rel, as a cause of lethal encephalitis.Upon HSE symptom onset, moribund mutant mice demonstrated elevated viral replication, neuroinflammation, and cell death in the hindbrain, resulting from defects in cell-mediated immunity.We next applied dual RNA sequencing of both host and viral transcripts, together with flow cytometry, to investigate early effects of the Rel C307X mutation in the HSV-1-infected brain.At least one day prior to symptom onset, mutant brainstems were characterized by elevated viral RNA transcription and by excess interferon-dependent and inflammatory gene expression, predictive of later infiltration of pathological T lymphocytes and myeloid cells that drove fulminant HSE.Thus, Rel C307X -dependent regulation of gene expression in the brain was detrimental in mouse HSE and involves distinct mechanisms from known cases of human childhood HSE.Conversely, the Rel C307X mutation was protective against CVB3-induced myocarditis, resulting in improved control of viral transcription, and a later reduction in infectious CVB3 viral load in the heart.Compared to susceptible wild-type mice, the mutation also resulted in dampened inflammatory and cell-mediated gene expression, suggesting that while T lymphocytes and myeloid cells infiltrated the infected heart, these cells were attenuated in their ability to cause pathological damage to the heart, and allowed the virus to be efficiently cleared.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.009
Threshold uncertainty score0.032

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0090.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.238
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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