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Record W7052384016

Role of IRE1-XBP1 arm in transendothelial migration of TNBC brain metastatic cells

2021· dissertation· en· W7052384016 on OpenAlexfundno aff

Bibliographic record

VenueMspace (University of Manitoba) · 2021
Typedissertation
Languageen
FieldEngineering
TopicParticle Accelerators and Free-Electron Lasers
Canadian institutionsnot available
FundersCancer Research SocietyResearch Manitoba
KeywordsUnfolded protein responseEndoplasmic reticulumDownregulation and upregulationGene silencingViability assayWestern blotCellCell migrationGene knockdown
DOInot available

Abstract

fetched live from OpenAlex

Introduction: Breast cancer represents the second most frequent cause of brain metastasis. 30% of the patients suffering from Triple Negative Breast Cancer (TNBC) develop brain metastasis which confers poor prognosis to breast cancer patients. However, the mechanisms that facilitate brain metastasis are not fully understood. TNBC cells have high levels of endoplasmic reticulum (ER) stress and show activation of the IRE1 pathway of the Unfolded Protein Response (UPR). Our lab previously demonstrated that MDA-231/BR cells, the brain metastatic subline of MDA-MB-231, have high endogenous levels of IRE1 activity suggesting that UPR pathway supports cancer cell survival under ER stress. My research investigates the involvement of the UPR IRE1 arm in cell survival and transendothelial migration of MDA-231/BR. Methods: Characterization of MDA-231/BR cells under different ER stress inducers and the IRE1α RNAse inhibitor MKC8866 was performed by Western blot experiments and viability assays. shXBP1 clones were established and assessed for successful downregulation of sXBP1 by Western blot detection. Cell migration was assessed by real time cell analysis and transendothelial Boyden-chamber migration assay. Cytokines secreted from MDA-231/BR under induced ER stress and MKC8866 were determined. Brain endothelial cells were subjected to MDA-231/BR conditioned media to determine changes in cell viability and differences in gene expression of tight junctional proteinsby qPCR. Preliminary in vivo analysis was performed to assess the effect of XBP1 silencing on MDA-231/BR brain metastasis. Results: MDA-231/BR cells showed constitutive activation of the IRE1 RNase arm which wasfurther induced by serum starvation and thapsigargin. The IRE1 RNase inhibitor MKC8866 completely blocked basal and induced IRE1 RNAse activity. In contrast to serum starvation, Tg treatment activated the pro-apoptotic PERK pathway which was confirmed by reduced cell viability and increased caspase 3/7 activity. MDA-231/BR cell migration studies under treatment with MKC8866 have shown a reduction in cell migration through endothelial layers. Knockdown of XBP1 however, did not consistently reduce endothelila transmigration of MDA-231/BR cells. ER stress-induced- MDA-231/BR cells show increased secretion of pro-metastatic cytokines IL-6, VEGF-A and thrombospondin-1. Brain endothelial cells exposed to MDA-231/BR conditioned media showed increased expression of tight junctional protein occludin under IRE1 RNase inhibition. In vivo data showed no significant difference in survival of mice in control versus doxycycline treated group. Conclusion: This study showed that the study of ER stress is dependent on different types of stressors used. Induction of ER stress leads to secretion of pro-inflammatory cytokines which can indirectly affect the endothelial cells to become more permeable and allow migration of breast cancer cells.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.533
Threshold uncertainty score0.895

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.184
Teacher spread0.177 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

Explore more

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