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Record W7052585716

Signaling mechanisms that regulate cytoskeletal organization Downstream of Netrin-1 mediated axonal chemoattraction

2011· dissertation· en· W7052585716 on OpenAlexfundno aff

Bibliographic record

VenueeScholarship@McGill (McGill) · 2011
Typedissertation
Languageen
FieldEngineering
TopicPlasma Diagnostics and Applications
Canadian institutionsnot available
FundersCanadian Institutes of Health ResearchKillam Trusts
KeywordsFilopodiaNetrinGrowth coneCytoskeletonNervous systemAxon guidanceSignal transductionNeuronCell signalingSemaphorin
DOInot available

Abstract

fetched live from OpenAlex

The development of the nervous system is highly dependent on the differentiation of various neuronal and glial cell populations, efficient targeting of axons, establishment of neuronal connections and continuous branching/pruning and establishment of new connections. These processes are possible through migration, adhesion and cytoskeletal rearrangement processes that are common in most organogenesis. The extracellular matrix and guidance molecules interact with cell surface receptors that transduce signaling mechanisms intracellularly allowing for these cellular responses to take place.Netrins are bifunctional chemotropic cues that attract or repel different classes of axons by signaling through the netrin receptors Deleted in Colorectal Cancer (DCC) and the UNC5 homologues (UNC5a, b, c and d) during the development of the nervous system. This family of chemotropic molecules is a member of the laminin superfamily. Similar to laminin-integrin signaling, netrin-1's interaction with its receptor DCC results in the activation of the Rho GTPases Rac and Cdc42 and the promotion of a signaling cascade that leads to growth cone cytoskeletal and membrane remodeling. This thesis focused on further identifying the signaling molecules and complexes downstream of DCC that are required for netrin-1 mediated commissural neuron axon chemoattraction.In the first part of this thesis we have used an unbiased mass spectrometry approach to identify signaling molecules complexed to DCC in commissural neurons isolated from E12/13 spinal cord. From the mass spectrometry data obtained we chose to characterize Arp2/3 and 14-3-3. Arp2/3 co-immunoprecipitated with DCC in commissural neuron in a netrin-1-dependent manner. We further established that netrin-1 mediated commissural growth cone expansion and filopodia remodeling is blocked by wiskostatin, a potent chemical inhibitor of N-WASP activity towards the Arp2/3 complex. The treatment of the neurons with wiskostatin also inhibited netrin-dependent externalization of DCC. These results suggest that actin polymerization resulting from N-WASP/Arp2/3 complexes may be required to maintain DCC cell surface recycling during netrin-1 mediated axon guidance. The 14-3-3 epsilon adaptor protein was also identified as a DCC associated protein. However, its association with DCC decreased with the addition of netrin-1. The inhibition of 14-3-3 function using a function-blocking peptide resulted in the collapse of commissural growth cones which could not be recovered by the addition of netrin-1. In the second part of this thesis we identified β-Pix as a potential GEF downstream of DCC involved in the activation and propagation of Rac-1 and Cdc42 signaling. We found that a β-Pix/Git complex associates with DCC in commissural neurons. β-Pix is highly expressed in the developing spinal cord in various neuronal subpopulations. Additionally functional assays using the overexpression of β-Pix mutants showed that β-Pix complexes and association with Pak are important steps in the maintenance of netrin-1 induced changes in GC morphology, in commissural axon extension to the midline, and for cortical neuron branching. Using modified GTPase assays we further demonstrated that β-Pix is required for Cdc42 and Rac-1 activation downstream of netrin-1 and is associated with the GTP-bound GTPases. β-Pix may associate with the GTPases by binding to Pak, or alternatively, may bind directly, as has been demonstrated for the related protein α-Pix, resulting in allosteric activation of the GTPase. These results support a novel model, in which β-Pix/Git complexes play an integral part in the activation of Rac-1 and Cdc42 downstream of DCC.These findings provide novel insight into the signaling events activated by netrin-1 downstream of DCC during commissural axon guidance. They have also identified new questions related to how signal transduction mechanisms activated by netrin-1 regulate the cytoskeleton of the axonal growth cone.

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.057
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.193
Teacher spread0.181 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2011
Admission routes1
Has abstractyes

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