Table 1 in Taxonomy and phylogeny of Stereaceae (Russulales, Basidiomycota): two new genera, nine new species and twenty new combinations
Bibliographic record
Abstract
Table 1. Species and sequences used in the phylogenetic analyses. New taxa are in bold with type specimens indicated with a number sign “#”. Taxon Voucher Locality ITS LSU Reference Acanthobasidium bambusicola He2357 China KU559343 KU574833 Dai & He (2016) Ac. delicatum CBS 233.86 France — MH873638 Vu et al. (2018) Ac. norvegicum T623 France — AY039328 Wu et al. (2001) Ac. quilae SPG3088 Chile MT831059 — Rajchenberg et al. (2021) Ac. weirii HHB13132 Italy KX306882 — Dai et al. (2017a) HHB13499 Canada KX306883 — Dai e t al. (2017a) HHB12678 USA — AY039322 Wu et al. (2001) Acanthofungus rimosus Wu9601-1 China MF043521 AY039333 Wu et al. (2019a) Aleurocystidiellum bernicchiae MR12636 Chile MT831037 MT831017 Rajchenberg et al. (2021) Al. subcruentatum He2886 China KU559341 KU574847 Dai & He (2016) Aleurobotrys botryosus He2712 China KX306877 KY450788 Dai et al. (2017b) DAOM211598 Canada AF506398 AF506398 Larsson & Larsson (2003) Aleurodiscus amorphus He4937 China MW533080 MW528916 This study HHB15282 USA — AY039312 Wu et al. (2001) A. canadensis Wu1207-90 China KY706203 KY706225 Dai & He (2017) A. cerussatum He2208 USA KX306874 KY450785 Dai et al. (2017a) A. effusus He2261 China KU559344 KU574834 Dai & He (2016) A. fujii He2919 China — KU574846 Dai & He (2016) He2921 China KC505571 KU574845 Dai & He (2016) A. gigasporus He2865 China MW533081 MW528917 This study Wu0108-15 China KY706205 KY706213 Dai & He (2017) He5605 # China MW533084 MW528920 This study A. grantii T569 USA — AY039326 Wu et al. (2001) He2895 China KU559347 KU574837 Dai & He (2016) A. isabellinus He5283 China MH109052 MH109046 Tian et al. (2018) A. lapponicus FP100753 USA — AY039320 Wu et al. (2001) A. laurentianus HHB11235 USA — AY039321 Wu et al. (2001) A. penicillatus T322 Canada — AY039315 Wu et al. (2001) A. pinicola Wu1106-16 China MF043524 MF043529 Wu et al. (2019a) Wu1308-54 China MF043525 MF043530 Wu et al. (2019a) A. subroseus He4807 China MH109054 MH109048 Tian et al. (2018) A. wakefieldiae He2579 China KU559355 KU574843 Dai & He (2016) Conferticium ochraceum He2900 China KY860409 KY860467 Liu (2017) He2932 China KY860411 KY860470 Liu (2017) Cm. subtropicum He1827 # China KY860405 KY860463 Liu (2017) He1804 China KY860404 MW528922 This study He3317 China KY860406 KY860464 Liu (2017) Confertotrama aspella He4262 China KY860402 KY860460 Liu (2017) LIN625 China AF506432 AF506432 Larsson & Larsson (2003) Ca. macrospora Wu9202-21 # China AF506377 AF506377 Larsson & Larsson (2003) Ca. rajchenbergii NH16358 Chile JQ716940 — Gorjón & Hallenberg (2013) Ca. rugulosa He5997 China — MW528924 This study He3427 China MW533086 MW528925 This study LodgeSJ110.1 USA AF506441 AF506441 Larsson & Larsson (2003) Gelatinostereum phlebioides He1951 China MW533097 MW528943 This study He6340 China MW533095 MW528941 This study He4492 China MW533096 MW528942 This study Dai14965 # China — MW528940 This study Gloeocystidiellum compactum Wu880615-21 China AF506434 AF506434 Larsson & Larsson (2003) Gm. formosanum Wu9404-19 China AF506439 AF506439 Larsson & Larsson (2003) Gloeocystidiopsis cryptacanthus KHL10334 Puerto Rico AF506442 AF506442 Larsson & Larsson (2003) Gs. flammea CBS 324.66 Central African Republic AF506437 AF506437 Larsson & Larsson (2003) Gs. heimii He5830 Sri Lanka MW533085 MW528921 This study CBS 321.66 Central African Republic AF506381 AF506381 Larsson & Larsson (2003) Gs. ravum NH13291 Estonia AF506382 AF506382 Larsson & Larsson (2003) CBS 125849 Estonia MH863805 MH875269 Vu et al. (2018) Gs. shenghuae He5411 # China MW533083 MW528919 This study Gs. tenuissimus He4816 China — MW528923 This study He3575 # China KX306880 KY706214 Dai et al. (2017a) Gloeomyces bambusinus He4263 China KY706208 KY706218 Tian et al. (2018) G. bicornis Wu1308-101 China LC433893 LC433900 Wu et al. (2022) Wu1308-125 # China LC433899 LC433906 Wu et al. (2022) G. cerussatum CBS 106.54 Netherlands — MH868789 Vu et al. (2018) G. dextrinoideocerussatus EL25-97 Spain AF506401 AF506401 Larsson & Larsson (2003) G. dextrinoideophyses He4078 # Thailand — KY450783 Dai et al. (2017b) G. formosanus Chen2736 # China LC433894 LC433901 Wu et al. (2022) Chen2748 China LC433895 LC433902 Wu et al. (2022) G. graminicola He2606 China KY860401 KY860459 Liu (2017) G. parvisporus Wu1307-84 China LC433897 LC433904 Wu et al. (2022)
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.001 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.002 | 0.005 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.001 | 0.001 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.145 | 0.077 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".