Torulaspora pahokee M. Silva, F. Paraiso, M. Groenewald, J. W. Fell & J. P. Sampaio 2025
Bibliographic record
Abstract
Torulaspora pahokee M. Silva, F. Paraíso, M. Groenewald, J.W. Fell & J.P. Sampaio, sp. nov. MB 853985. Fig. 4Y–Z. Etymology: Torulaspora pahokee. pa.ho’kee, NL. app. n. pahokee, referring to Pahokee, meaning “Grassy Water”, the name given to the Everglades by the Seminole, a Native American tribe that inhabits Florida. Typus: USA, Florida, Everglades, sea water, 1996, J. Fell (holotype PYCC 9316H, ex-holotype cultures PYCC 9316, CBS 11100). The holotype is permanently maintained in a metabolically inactive state in the Portuguese Yeast Culture Collection, Caparica, Portugal. The genome of this species was deposited at DDBJ/ENA/GenBank under the accession GCA_012851095. The version described in this paper is v. 1. Description: After 1 wk on YM agar at 25 °C, cultures are smooth, cream-coloured, and butyrous. After 3 d of growth on YM agar at 25 °C, cells are globose (3–5 µm) to sub-globose (4–5 × 2–3 µm) and occur singly or in pairs, and proliferation is by multilateral budding (Fig. 4Y). On Dalmau plates after 2 wk at 25 °C, no pseudohyphae nor true hyphae are formed. Sexual reproduction is observed on acetate agar after 10 d at 17 °C, and the studied strains appear to be homothallic. Asci are persistent and are formed after cell-to-cell conjugation involving either a cell and its bud or two independent cells. Asci produce one to two smooth and spherical ascospores, measuring 2.5–3 µm diam. (Fig. 4Z). Typical Torulaspora cellular extensions that resemble conjugation tubes are frequent but not involved in conjugation. The physiological and biochemical profile of the species in shown in Table 1 and Table S5. Habitat and distribution: This species was found in sea water, Everglades, Florida, USA Additional cultures examined: CBS 11121, CBS 11123, CBS 11124 (see Table S1 for details).
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.000 | 0.001 |
| Research integrity | 0.001 | 0.000 |
| Insufficient payload (model declined to judge) | 0.006 | 0.005 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".