Additional file 6 of Small nucleolar RNA dysregulation and potential roles in bovine subclinical mastitis
Bibliographic record
Abstract
Supplementary Material 6. Table S6A Functional enrichment Gene Ontology Biological processes of differentially expressed snoRNA correlated genes of Staphylococcus aureus versus control group. Table S6B Functional enrichment Gene Ontology Biological processes of differentially expressed snoRNA correlated genes of Staphylococcus chromogenes versus control group. Table S6C Functional enrichment KEGG pathway analysis of differentially expressed snoRNA correlated genes of Staphylococcus aureus versus control group. Table S6D Functional enrichment KEGG pathway analysis of differentially expressed snoRNA correlated genes of Staphylococcus chromogenes versus control group. Table S6E Functional enrichment KEGG pathway analysis of differentially expressed snoRNA correlated genes specific to Staphylococcus aureus, Staphylococcus chromogenes and Staphylococcus aureus versus Staphylococcus chromogenes. Table S6F Functional enrichment Gene Ontology Biological processes terms of differentially expressed snoRNA correlated genes specific to Staphylococcus aureus, Staphylococcus chromogenes and Staphylococcus aureus versus Staphylococcus chromogenes. Table S6G Functional enrichment KEGG pathways of 7 hub snoRNAs correlated genes of Staphylococcus chromogenes versus control group. Table S6H Functional enrichment Gene Ontology Biological processes of 7 hub snoRNAs correlated genes of Staphylococcus chromogenes versus control group. Table S6I Functional enrichment Gene Ontology Biological processes of 7 hub snoRNAs correlated genes of Staphylococcus aureus versus control group. Table S6J Functional enrichment KEGG pathways of 7 hub snoRNAs correlated genes of Staphylococcus aureus versus control group. Table S6K Functional enrichment Gene Ontology Biological processes of SNORA1 correlated genes of Staphylococcus aureus versus control group. Table S6L Functional enrichment KEGG pathway analysis of differentially expressed SNORA1 correlated genes of Staphylococcus aureus versus control group. Table S6M Functional enrichment Gene Ontology Biological processes of SNORA66 correlated genes of Staphylococcus aureus versus control group. Table S6N Functional enrichment KEGG pathway analysis of differentially expressed SNORA66 correlated genes of Staphylococcus aureus versus control group. Table S6O Functional enrichment Gene Ontology Biological processes of SNORA79 correlated genes of Staphylococcus chromogenes versus control group. Table S6P Functional enrichment KEGG pathway analysis of differentially expressed SNORA79 correlated genes of Staphylococcus aureus versus control group. Table S6Q Functional enrichment Gene Ontology Biological processes of SNORD49 correlated genes of Staphylococcus chromogenes versus control group. Table S6R Functional enrichment KEGG pathway analysis of differentially expressed SNORD49 correlated genes of Staphylococcus aureus versus control group.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.002 | 0.019 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.001 |
| Bibliometrics | 0.002 | 0.003 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.002 | 0.001 |
| Open science | 0.002 | 0.001 |
| Research integrity | 0.002 | 0.001 |
| Insufficient payload (model declined to judge) | 0.803 | 0.105 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".