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Record W7085888211 · doi:10.5281/zenodo.17298261

X-Ray diffraction images from a crystal of D. radiodurans PprA - PDB 9YL4 - Crystal form xMJ4720/xMJ4721

2025· dataset· en· W7085888211 on OpenAlexaff

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2025
Typedataset
Languageen
FieldMaterials Science
TopicEnzyme Structure and Function
Canadian institutionsWestern University
Fundersnot available
KeywordsCrystal (programming language)Deinococcus radioduransDiffractionTruncation (statistics)Rotation (mathematics)BeamlineX-ray crystallography

Abstract

fetched live from OpenAlex

Intact S-F helical filament of the PprA protein from Deinococcus radiodurans. Crystal Form xMJ4720/xMJ4721. Δ1-8 truncation with D180K/D184K mutation. X-Ray Source: APS BEAMLINE 17-ID Detector: PILATUS 6M, 60-0103, IMCA-CAT Collected at wavelength 0.9795 Å MJ4720 and MJ4721 are each datasets collected from scanning different focal points of the same crystal. Each scan was collected as a 360 degree rotation about omega - 1440 frames at a width of 0.25°/frame. Raw data integrated and scaled in autoPROC. Reflections from datasets xMJ4720 and xMJ4721 were scaled and merged together into one dataset

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Science and technology studies, Insufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.106
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0440.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.235
Teacher spread0.221 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

Explore more

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