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Record W7086876872 · doi:10.1016/j.softx.2025.102392

VaSP: Vascular Fluid–Structure Interaction Pipeline

2025· article· en· W7086876872 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueSoftwareX · 2025
Typearticle
Languageen
FieldImmunology and Microbiology
TopicT-cell and B-cell Immunology
Canadian institutionsUniversity of Toronto
FundersHorizon 2020Natural Sciences and Engineering Research Council of Canada
KeywordsPython (programming language)SoftwareGraphical user interfaceAutomationPipeline (software)Software toolExtensibility

Abstract

fetched live from OpenAlex

A variety of commercial and open-source software packages exist for modeling blood flow dynamics and vascular wall mechanics of cardiovascular systems via fluid–structure interaction simulations (FSI). While these existing tools are feature-rich, this breadth often comes at the cost of increased complexity and large codebases, which, combined with implementation in low-level programming languages, effectively limit transparency and accessibility. Moreover, many of these software packages primarily rely on graphical user interfaces for a more intuitive experience; however, this can hinder reproducibility and automation of research workflows. Here, we present Vascular Fluid–Structure Interaction Pipeline (VaSP), a transparent, flexible, and compact Python package with a command-line interface. In contrast to the vast majority of existing software, VaSP is tailored for transitional flow and high-frequency vascular wall vibrations. VaSP takes a medical image-derived surface model as input, generates a volumetric mesh with fluid and solid domains for FSI simulations, and post-processes the results for hemodynamic and wall mechanical analyses. By leveraging high-level Python packages such as FEniCS and VMTK, VaSP ensures accessibility for users of diverse expertise levels and promotes reproducible, scriptable workflows.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.536
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.231
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it