Replication Data for: Optimizing the membrane composition of immobilized giant vesicles for effective entrapment and observation of motile bacteria
Bibliographic record
Abstract
This dataset can be used to replicate the results found in the article "Optimizing the membrane composition of immobilized giant vesicles for effective entrapment and observation of motile bacteria." A folder called the "Entrapment Efficiency" is a set of videos used to calculate how efficiently giant vesicles entrap motile bacteria AMB-1. Individual AMB-1 bacteria were counted in each video and an efficiency of bacteria trapped per area was calculated. The second is the "Lipid Mixture Spectra Data" which is spectrophotometry data of Laurdan, a lipophilic dye that reports on membrane order in the created giant vesicles. Using these spectra, one can calculate the generalized polarization of the different vesicles, which is an approximation of the membrane order in the vesicles. All .CZI files are able to opened with FIJI.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.003 | 0.014 |
| Meta-epidemiology (narrow) | 0.005 | 0.001 |
| Meta-epidemiology (broad) | 0.003 | 0.003 |
| Bibliometrics | 0.004 | 0.005 |
| Science and technology studies | 0.002 | 0.001 |
| Scholarly communication | 0.004 | 0.002 |
| Open science | 0.004 | 0.003 |
| Research integrity | 0.004 | 0.003 |
| Insufficient payload (model declined to judge) | 0.094 | 0.120 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".